Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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ChIP-seq peak caller workflow MACS2 based
This workflow execute peak caller and QC for ChIP-seq using MACS2 |
![]() Path: workflows/ChIP-Seq/peak-calling-MACS2-genome-size.cwl Branch/Commit ID: 1b1cb5bbbe53a2dd5d7de7cdbff19c1bdbe23a49 |
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timelimit3-wf.cwl
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![]() Path: tests/timelimit3-wf.cwl Branch/Commit ID: 57baec040c99d7edef8242ef51b5470b1c82d733 |
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align_sort_sa
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![]() Path: task_types/tt_align_sort_sa.cwl Branch/Commit ID: 69c0f25d08cfa02d8bfaa85ce5d70dd14cc52e3f |
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umi duplex alignment workflow
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![]() Path: definitions/subworkflows/duplex_alignment.cwl Branch/Commit ID: 6a55118f915e24d2ad008c93a02d9de5643f5511 |
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bqsr_workflow.cwl
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![]() Path: workflows/BQSR/bqsr_workflow.cwl Branch/Commit ID: b0f226a9ac5152f3afe0d38c8cd54aa25b8b01cf |
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grep-and-count.cwl
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![]() Path: zatsu_cwl/grep-and-count.cwl Branch/Commit ID: 4aa7ab4e4f8eed6b676ea04c53afd3fe57d2ca7b |
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prefetch_fastq.cwl
Worfklow combining an SRA fetch from NCBI with a fastq-dump cmd |
![]() Path: sratoolkit/prefetch_fastq.cwl Branch/Commit ID: 66f620da5b0a11e934a6da83272205a2516bcd91 |
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snps_and_indels.cwl
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![]() Path: workflows/subworkflows/snps_and_indels.cwl Branch/Commit ID: 3441040dfaecba58150c13a95a6a93657b00778a |
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kmer_cache_retrieve
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![]() Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: 69c0f25d08cfa02d8bfaa85ce5d70dd14cc52e3f |
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mutect2_calling.cwl
GATK4.1.2 Mutect2 workflow |
![]() Path: subworkflows/mutect2_calling.cwl Branch/Commit ID: 4a93f8fcd34a25427b4ade8afe1772a3287fcf1e |