Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph LSU-from-tablehits.cwl

https://github.com/FarahZKhan/ebi-metagenomics-cwl.git

Path: tools/LSU-from-tablehits.cwl

Branch/Commit ID: master
workflow graph ACCESS_pipeline.cwl

https://github.com/mskcc/ACCESS-Pipeline.git

Path: workflows/ACCESS_pipeline.cwl

Branch/Commit ID: master
workflow graph cluster_blastp_wnode and gpx_qdump combined

https://github.com/ncbi/pgap.git

Path: task_types/tt_cluster_and_qdump.cwl

Branch/Commit ID: master
workflow graph wf_bam_to_bigwig.cwl

https://github.com/YeoLab/sailor.git

Path: cwl/wf_bam_to_bigwig.cwl

Branch/Commit ID: master
workflow graph wf_get_peaks_scatter_se.cwl

The \"main\" workflow. Takes fastq files generated using the seCLIP protocol (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5991800/) and outputs candidate RBP binding regions (peaks). runs: wf_get_peaks_se.cwl through scatter across multiple samples.

https://github.com/YeoLab/eclip.git

Path: cwl/wf_get_peaks_scatter_se.cwl

Branch/Commit ID: master
workflow graph tRNA_selection.cwl

https://github.com/farahzkhan/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: master
workflow graph scatter GATK HaplotypeCaller over intervals

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl

Branch/Commit ID: No_filters_detect_variants
workflow graph annotator_sub_wf.cwl

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git

Path: annotator_sub_wf.cwl

Branch/Commit ID: develop
workflow graph helloworld-slurmcern.cwl

https://github.com/reanahub/reana-demo-helloworld.git

Path: workflow/cwl/helloworld-slurmcern.cwl

Branch/Commit ID: master
workflow graph bwa-alignment.cwl

https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Alignments/bwa-alignment.cwl

Branch/Commit ID: 8967e816cb89dd9349c8c6deff686aeb8b118f1c