Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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mutect panel-of-normals workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/panel_of_normals.cwl Branch/Commit ID: 4bc0a4577d626b65a4b44683e5a1ab2f7d7faf4c |
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basename-fields-test.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/basename-fields-test.cwl Branch/Commit ID: a0f7d43bbc706af2a844be93fc19b2e4e4da626c |
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count-lines8-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines8-wf.cwl Branch/Commit ID: fc6ca8b1498926f705dcfde7ab0a365bd09a9675 |
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exome alignment and somatic variant detection for cle purpose
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/cle_somatic_exome.cwl Branch/Commit ID: f9600f9959acdc30259ba7e64de61104c9b01f0b |
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1st-workflow.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/examples/1st-workflow.cwl Branch/Commit ID: fc6ca8b1498926f705dcfde7ab0a365bd09a9675 |
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Filter Protein Seeds I; Find ProSplign Alignments I
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_compart_filter_prosplign.cwl Branch/Commit ID: 8e00678051e8e11fe2798175401bce04c7eeef19 |
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Generate genome index bowtie
Workflow makes indices for [bowtie](http://bowtie-bio.sourceforge.net/tutorial.shtml) v1.2.0 (12/30/2016). Executes `bowtie-index` to generate indices requires genome [FASTA](http://zhanglab.ccmb.med.umich.edu/FASTA/) file as input, returns results as a directory |
https://github.com/datirium/workflows.git
Path: workflows/bowtie-index.cwl Branch/Commit ID: d6f58c383d0676269afb519399061191a1144a6a |
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02-trim-pe.cwl
ChIP-seq 02 trimming - reads: PE |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ChIP-seq_pipeline/02-trim-pe.cwl Branch/Commit ID: f053d1a92762b38b950c4982e3b344cec26f4f36 |
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index sim seq
create sorted / filtered similarity file with feature sequences, and index by md5 |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/index_sim_seq.workflow.cwl Branch/Commit ID: 7797879b801042984b5ae651754815fc3f77ea41 |
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predict-workflow.cwl
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https://github.com/Duke-GCB/iMADS-worker.git
Path: predict_service/predict-workflow.cwl Branch/Commit ID: a5586cb887e79320b1a3f247591f05102669d0b4 |