Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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indexing_bed
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/indexing_bed.cwl Branch/Commit ID: 1.0.9 |
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bact_get_kmer_reference
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https://github.com/ncbi/pgap.git
Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: f390475a4e0898d4933f0a28dae278aa35803eb1 |
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TransDecoder 2 step workflow, running TransDecoder.LongOrfs (step 1) followed by TransDecoder.Predict (step2)
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https://github.com/hmenager/workflow-is-cwl.git
Path: workflows/TransDecoder-v5-wf-2steps.cwl Branch/Commit ID: master |
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Runs InterProScan on batches of sequences to retrieve functional annotations.
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https://github.com/hmenager/workflow-is-cwl.git
Path: workflows/InterProScan-v5-chunked-wf.cwl Branch/Commit ID: master |
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Decompress
Decompress mate pair fastq files |
https://github.com/MG-RAST/amplicon.git
Path: CWL/Workflows/decompress_mate_pair.workflow.cwl Branch/Commit ID: master |
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Seed Protein Alignments
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_seed_seqids.cwl Branch/Commit ID: 4ab36e0fe1b0ab18cad9d8f1c1f806ec316d7734 |
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bam to trimmed fastqs and biscuit alignments
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl Branch/Commit ID: low-vaf |
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EMG pipeline v4.0 (paired end version)
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https://github.com/FarahZKhan/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v4-paired.cwl Branch/Commit ID: master |
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tRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/tRNA_selection.cwl Branch/Commit ID: f993cad |
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Create Genomic Collection for Bacterial Pipeline, ASN.1 input
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https://github.com/ncbi/pgap.git
Path: genomic_source/wf_genomic_source_asn.cwl Branch/Commit ID: master |
