Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
mutect parallel workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/mutect.cwl Branch/Commit ID: aba52e94b6d7470132d3c092c26d67e29d615300 |
|
|
|
bam to trimmed fastqs and HISAT alignments
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 195b4ab487c939eb32a55d9f78bc1befd100caae |
|
|
|
bam-bedgraph-bigwig.cwl
Workflow converts input BAM file into bigWig and bedGraph files |
https://github.com/datirium/workflows.git
Path: subworkflows/bam-bedgraph-bigwig.cwl Branch/Commit ID: d6ec0dee61ef65a110e10141bde1a79332a64ab0 |
|
|
|
mutect parallel workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/mutect.cwl Branch/Commit ID: 7f9dfad8e45ca096ae738cff646195b2b1ba7d7f |
|
|
|
Varscan Workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan_pre_and_post_processing.cwl Branch/Commit ID: 7f9dfad8e45ca096ae738cff646195b2b1ba7d7f |
|
|
|
Apply filters to VCF file
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/filter_vcf_mouse.cwl Branch/Commit ID: 7f9dfad8e45ca096ae738cff646195b2b1ba7d7f |
|
|
|
Exome QC workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_exome.cwl Branch/Commit ID: a23f42ef49c10a588fd35a3afaad5de03e253533 |
|
|
|
exome alignment and germline variant detection
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: 6f9f8a2057c6a9f221a44559f671e87a75c70075 |
|
|
|
Apply filters to VCF file
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/filter_vcf.cwl Branch/Commit ID: d2c2f2eb846ae2e9cdcab46e3bb88e42126cb3f5 |
|
|
|
Run pindel on provided region
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: 6f9f8a2057c6a9f221a44559f671e87a75c70075 |
