Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph GATK4_SomaticVariantCaller_4_1_3_0.cwl

https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git

Path: janis_pipelines/wgs_somatic/cwl/tools/GATK4_SomaticVariantCaller_4_1_3_0.cwl

Branch/Commit ID: d1bcf010d5c39d5fc01b8862db4f258df7d4f65d
workflow graph io-int-default-tool-and-wf.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/io-int-default-tool-and-wf.cwl

Branch/Commit ID: 57baec040c99d7edef8242ef51b5470b1c82d733
workflow graph ValidateTelescopeEfficiency

Validate telescope throughput taking into account the optical (mirror configurations, reflectivity, shadowing elements, camera filter, light cones) and camera (photo-detection efficiency) components.

 https://github.com/gammasim/workflows.git

Path: workflows/ValidateTelescopeEfficiency.cwl

Branch/Commit ID: 789752af87eb190387ff2acb4c95c7a5cdb961e7
workflow graph cond-wf-006_nojs.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/conditionals/cond-wf-006_nojs.cwl

Branch/Commit ID: 57baec040c99d7edef8242ef51b5470b1c82d733
workflow graph align_merge_sas

https://github.com/ncbi/pgap.git

Path: task_types/tt_align_merge_sas.cwl

Branch/Commit ID: 69c0f25d08cfa02d8bfaa85ce5d70dd14cc52e3f
workflow graph stage_data_workflow.vcf_to_aliquot_maf.cwl

https://github.com/NCI-GDC/aliquot-maf-cwl.git

Path: vcf-to-aliquot-maf/subworkflows/stage_data_workflow.vcf_to_aliquot_maf.cwl

Branch/Commit ID: 9aedc3fb22a3f5b9146bc5e9a393085050f90c95
workflow graph preparation_workflow.cwl

https://github.com/nci-gdc/gatk4_mutect2_cwl.git

Path: utils-cwl/subworkflow/preparation_workflow.cwl

Branch/Commit ID: 58b62b1bf329b3fbffbd5d9080709999bebc1763
workflow graph transcriptome-assembly.cwl

https://github.com/pitagora-network/DAT2-cwl.git

Path: workflow/transcriptome-assembly/transcriptome-assembly.cwl

Branch/Commit ID: 6db4456ca7314b036e59f50910654066da99772a
workflow graph mutect2_and_filter.cwl

Runs mutect2 variant calling and and variant filter.

 https://github.com/demichelislab/SPICE-pipeline-CWL.git

Path: cwl/workflows/mutect2_and_filter.cwl

Branch/Commit ID: 06e4a6f868651c8e26a88db518af1974159ecba9
workflow graph umi molecular alignment workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/molecular_qc.cwl

Branch/Commit ID: e649fcb1092905c539be026a3f23c82d5b0871d2