Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Create Genomic Collection for Bacterial Pipeline, ASN.1 input	https://github.com/ncbi/pgap.git Path: genomic_source/wf_genomic_source_asn.cwl Branch/Commit ID: 61e3752f1f5e2ee498fa024c235226f8580be942
	Run genomic CMsearch (Rfam rRNA)	https://github.com/ncbi/pgap.git Path: bacterial_ncrna/wf_gcmsearch.cwl Branch/Commit ID: 61e3752f1f5e2ee498fa024c235226f8580be942
	Exome QC workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_exome.cwl Branch/Commit ID: 6f9f8a2057c6a9f221a44559f671e87a75c70075
	Non-Coding Bacterial Genes	https://github.com/ncbi/pgap.git Path: bacterial_noncoding/wf_bacterial_noncoding.cwl Branch/Commit ID: 61e3752f1f5e2ee498fa024c235226f8580be942
	Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass1.cwl Branch/Commit ID: 61e3752f1f5e2ee498fa024c235226f8580be942
	Detect DoCM variants	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/docm_germline.cwl Branch/Commit ID: 4ae14dd3a447c90022e3dfeb53fc05b8436e2775
	tt_hmmsearch_wnode.cwl	https://github.com/ncbi/pgap.git Path: task_types/tt_hmmsearch_wnode.cwl Branch/Commit ID: 8e00678051e8e11fe2798175401bce04c7eeef19
	Add snv and indel bam-readcount files to a vcf	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/vcf_readcount_annotator.cwl Branch/Commit ID: 4ae14dd3a447c90022e3dfeb53fc05b8436e2775
	Varscan Workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: 4ae14dd3a447c90022e3dfeb53fc05b8436e2775
	HS Metrics workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/hs_metrics.cwl Branch/Commit ID: d2c2f2eb846ae2e9cdcab46e3bb88e42126cb3f5