Explore Workflows

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter.git

Path: preprocessor_for_oxog.cwl

Branch/Commit ID: develop

Derive (or set) an overall efficiency parameter to the telescope throughput due to variations of the optical throughput. Allow for dependencies on off-axis angle and wavelength.

https://github.com/gammasim/workflows.git

Path: workflows/SetTelescopeEfficiency.cwl

Branch/Commit ID: main

ATAC-seq pipeline - reads: SE - with blacklist removal

https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/pipeline-se-blacklist-removal.cwl

Branch/Commit ID: master

https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/exomeseq.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: exomeseq-02-variantdiscovery.cwl

https://github.com/EOSC-LOFAR/presto-cwl.git

Path: presto.cwl

Branch/Commit ID: visualise

https://github.com/arvados/czi-pangenome-usecase.git

Path: pangenome-generate_spoa.cwl

Branch/Commit ID: main

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/chksum_xam_to_interleaved_fq.cwl

Branch/Commit ID: develop

https://github.com/hubmapconsortium/azimuth-annotate.git

Path: pipeline.cwl

Branch/Commit ID: 94520dc

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/env-wf1.cwl

Branch/Commit ID: main

https://github.com/FarahZKhan/scalability-reproducibility-chapter.git

Path: CWL/workflow.cwl

Branch/Commit ID: master