Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Per-region pindel	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: c6bbd4cdd612b3b5cc6e9000df4800c21e192bf5
	retrieve sequence and perform pairwise alignment (sub-workflow process) Perform pairwise alignment of protein sequences for pairs identified by structural similarity search. retrieve sequence from blastdbcmd result makeblastdb: ../Tools/14_makeblastdb.cwl blastdbcmd: ../Tools/15_blastdbcmd.cwl seqretsplit: ../Tools/16_seqretsplit.cwl needle (Global alignment): ../Tools/17_needle.cwl water (Local alignment): ../Tools/17_water.cwl	https://github.com/yonesora56/plant2human.git Path: Workflow/11_retrieve_sequence_wf.cwl Branch/Commit ID: 1d9df140de0ffc7d22b6d151b98b59de162e7c37
	canine_vep_module.cwl	https://github.com/d3b-center/canine-dev.git Path: subworkflows/canine_vep_module.cwl Branch/Commit ID: 7da5645975f5712362cce7908d2ab138e05876fb
	gathered exome alignment and somatic variant detection for cle purpose	https://github.com/tmooney/cancer-genomics-workflow.git Path: definitions/pipelines/somatic_exome_cle_gathered.cwl Branch/Commit ID: 0db1a5f1ceedd4416ac550787c27b99c87dbe985
	mut2.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/mut2.cwl Branch/Commit ID: 63f539ba60e91f0cb3ce7cda2c5da5c65525c375
	gp_makeblastdb	https://github.com/ncbi/pgap.git Path: progs/gp_makeblastdb.cwl Branch/Commit ID: 807fe40bca1fbd18ede6250851b9f71de98da69b
	MoveData-workflow.cwl	https://github.com/nal-i5k/organism_onboarding.git Path: MoveData-workflow.cwl Branch/Commit ID: add45db6f08de518e224bdc3c04094fd69cad2d2
	Cell Ranger Build Reference Indices Cell Ranger Build Reference Indices ===================================	https://github.com/datirium/workflows.git Path: workflows/cellranger-mkref.cwl Branch/Commit ID: 7ae3b75bbe614e59cdeaba06047234a6c40c0fe9
	Subworkflow to allow calling cnvkit with cram instead of bam files	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cram_to_cnvkit.cwl Branch/Commit ID: 6a55118f915e24d2ad008c93a02d9de5643f5511
	Cut-n-Run pipeline paired-end Experimental pipeline for Cut-n-Run analysis. Uses mapping results from the following experiment types: - `chipseq-pe.cwl` - `trim-chipseq-pe.cwl` - `trim-atacseq-pe.cwl` Note, the upstream analyses should not have duplicates removed	https://github.com/datirium/workflows.git Path: workflows/trim-chipseq-pe-cut-n-run.cwl Branch/Commit ID: 87f213456b3f966b773d396cce1fe5a272dad858