Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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trnascan_wnode and gpx_qdump combined
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![]() Path: bacterial_trna/wf_scan_and_dump.cwl Branch/Commit ID: 4ab36e0fe1b0ab18cad9d8f1c1f806ec316d7734 |
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Sentinel-3 SLSTR Level-2 reprojection and tiling
This service takes as input a Sentinel-3 SLSTR Level 2 (SL_2_LST____) product on DESCENDING pass and does the reprojection and tiling |
![]() Path: docs/examples/slstr-tiling.cwl Branch/Commit ID: c5195e1ce0522a39061bb15bf62b2f247894862a Packed ID: slstr-tiling |
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exome alignment with qc, no bqsr, no verify_bam_id
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![]() Path: definitions/pipelines/alignment_exome_nonhuman.cwl Branch/Commit ID: 5fda2d9eb52a363bd51011b3851c2afb86318c0c |
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HS Metrics workflow
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![]() Path: definitions/subworkflows/hs_metrics.cwl Branch/Commit ID: 5fda2d9eb52a363bd51011b3851c2afb86318c0c |
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Create Genomic Collection for Bacterial Pipeline, ASN.1 input
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![]() Path: genomic_source/wf_genomic_source_asn.cwl Branch/Commit ID: 4ab36e0fe1b0ab18cad9d8f1c1f806ec316d7734 |
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Run tRNAScan
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![]() Path: bacterial_trna/wf_trnascan.cwl Branch/Commit ID: 4ab36e0fe1b0ab18cad9d8f1c1f806ec316d7734 |
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MoveData-workflow.cwl
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![]() Path: MoveData-workflow.cwl Branch/Commit ID: 556884e8e205295e561b1d9140d836cdd6c1d8c9 |
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BD Rhapsody™ Sequence Analysis Pipeline
The BD Rhapsody™ assays are used to create sequencing libraries from single cell transcriptomes. After sequencing, the analysis pipeline takes the FASTQ files and a reference file for gene alignment. The pipeline generates molecular counts per cell, read counts per cell, metrics, and an alignment file. |
![]() Path: rhapsody_pipeline_2.0.cwl Branch/Commit ID: 50ed14112f9db254034dd5530cf1a768e04eb7ff Packed ID: main |
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0966f2689c10438fb382dc0ea2e6a321.cwl
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![]() Path: .renku/workflow/0966f2689c10438fb382dc0ea2e6a321.cwl Branch/Commit ID: 81c94f8ff59a16634eeb692dba295a961bd786f3 |
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count-lines7-single-source-wf_v1_1.cwl
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![]() Path: testdata/count-lines7-single-source-wf_v1_1.cwl Branch/Commit ID: 124a08ce3389eb49066c34a4163cbbed210a0355 |