Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph pindel parallel workflow

https://github.com/litd/analysis-workflows.git

Path: definitions/subworkflows/pindel.cwl

Branch/Commit ID: master
workflow graph gdc_dnaseq_ar_workflow.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: subworkflows/main/gdc_dnaseq_ar_workflow.cwl

Branch/Commit ID: master
workflow graph bam-bedgraph-bigwig.cwl

https://github.com/Barski-lab/ga4gh_challenge.git

Path: subworkflows/bam-bedgraph-bigwig.cwl

Branch/Commit ID: v0.0.5
workflow graph pangenome-generate.cwl

https://github.com/hpobio-lab/viral-analysis.git

Path: cwl/pangenome-generate/pangenome-generate.cwl

Branch/Commit ID: master
workflow graph gp_makeblastdb

https://github.com/ncbi/pgap.git

Path: progs/gp_makeblastdb.cwl

Branch/Commit ID: test
workflow graph nucleo_qc_aggregator.cwl

https://github.com/msk-access/nucleo_qc.git

Path: qc_aggregator/nucleo_qc_aggregator.cwl

Branch/Commit ID: main
workflow graph ChIP-Seq

This workflow execute peak caller and QC from ChIP-Seq. For TF 1. Do not use broad, call-summits, broad-cutoff. 2. nomodel = True For Histones (H3K27me3, H3K9me3, H3K36me3): 1. Use broad, call-summits, broad-cutoff == 0.1. 2. nomodel = False For other histone marks: 1. Do not use broad, broad-cutoff. 2. nomodel = False 3. call-summits = True

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/ChIP-Seq/peak_caller-with-control.cwl

Branch/Commit ID: master
workflow graph CRAM_md5sum_checker_wrapper.cwl

This wraps the md5sum tool with a checker workflow that runs both the tool and a tool that performs verification of results

https://github.com/DataBiosphere/topmed-workflows.git

Path: CRAM-no-header-md5sum/CRAM_md5sum_checker_wrapper.cwl

Branch/Commit ID: 1.19.0
workflow graph Produce a list of residue-mapped structural domain instances from Pfam ids

Retrieve and process the PDB structures corresponding to the Pfam family ids resulting in a list of residue-mapped structural domain instances along with lost structural instances (requires Data/pdbmap downloaded from Pfam and uses SIFTS resource for UniProt to PDB residue Mapping)

https://github.com/HrishiDhondge/CroMaSt.git

Path: Tools/resmapping_pfam_instances_subwf.cwl

Branch/Commit ID: main
workflow graph test-extract_fraginfo.cwl

https://github.com/kyusque/abmp_log_dump2pieda.git

Path: test-extract_fraginfo.cwl

Branch/Commit ID: master