Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	scatter GATK HaplotypeCaller over intervals	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: 2f65fc96207a71b1cda4e246f808bed056608cd0
	scatter-wf1.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/scatter-wf1.cwl Branch/Commit ID: 0e98de8f692bb7b9626ed44af835051750ac20cd
	mut3.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/mut3.cwl Branch/Commit ID: a70a83fe14a100cd16e2402ec17b2904f5eeb17d
	maf2vcf_gz_workflow.cwl Workflow to convert a maf file into a vcf.gz with .tbi index	https://github.com/mskcc/pluto-cwl.git Path: cwl/maf2vcf_gz_workflow.cwl Branch/Commit ID: 342e6f1f4f7a3839e579fbe96ccc8d6f7a61ac77
	Interval overlapping alignments counts Interval overlapping alignments counts ====================================== Reports the count of alignments from multiple samples that overlap specific intervals.	https://github.com/datirium/workflows.git Path: workflows/bedtools-multicov.cwl Branch/Commit ID: 36fd18f11e939d3908b1eca8d2939402f7a99b0f
	tt_fscr_calls_pass1	https://github.com/ncbi/pgap.git Path: task_types/tt_fscr_calls_pass1.cwl Branch/Commit ID: 369afa7090a7480e6a0b144eff967a4a52b6fde2
	exome alignment with qc, no bqsr, no verify_bam_id	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/alignment_exome_mouse.cwl Branch/Commit ID: 1585504ccffafac53b1594349ed934f45206ee2b
	pipeline_v2.cwl#openoil_pipeline Animation of an oil spill with openoil	https://github.com/ILIAD-ocean-twin/application_package.git Path: openoil/pipeline_v2.cwl Branch/Commit ID: 9a0db98839bbc655e12d49f56c61deecd77ff14c Packed ID: openoil_pipeline
	Genomic regions intersection and visualization Genomic regions intersection and visualization ============================================== 1. Merges intervals within each of the filtered peaks files from ChIP/ATAC experiments 2. Overlaps merged intervals and assigns the nearest genes to them	https://github.com/datirium/workflows.git Path: workflows/intervene.cwl Branch/Commit ID: 57863b6131d8262c5ce864adaf8e4038401e71a2
	hello-workflow.cwl	https://github.com/inab/hello-workflows.git Path: cwl/hello-workflow.cwl Branch/Commit ID: ae072eda1efab08af0275b5e962d9b3ce9a1ade1