Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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merge_filter.cwl
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https://github.com/CompEpigen/ChIPseq_workflows.git
Path: CWL/workflow_modules/merge_filter.cwl Branch/Commit ID: f249c81cf795ea212aae6c34842f0a6683f354ee |
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exome alignment and tumor-only variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/exome.cwl Branch/Commit ID: 735be84cdea041fcc8bd8cbe5728b29ca3586a21 |
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cache_test_workflow.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/cache_test_workflow.cwl Branch/Commit ID: 0184e647cde1bc44279107d6df31b3ebb138769c |
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bam to trimmed fastqs and HISAT alignments
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: e56f1024306aeb427d8aae2fff715ed2e8b8f86f |
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mutect parallel workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/mutect.cwl Branch/Commit ID: ddd748516b25256a461ea9277303406fa2759b00 |
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PGAP Pipeline
PGAP pipeline for external usage, powered via containers |
https://github.com/ncbi/pgap.git
Path: wf_common.cwl Branch/Commit ID: 7e875f77b615b4f7ebfb23a1da30eb216cc52919 |
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running cellranger mkfastq and count
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl Branch/Commit ID: e56f1024306aeb427d8aae2fff715ed2e8b8f86f |
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umi duplex alignment workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/duplex_alignment.cwl Branch/Commit ID: ddd748516b25256a461ea9277303406fa2759b00 |
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gathered exome alignment and somatic variant detection for cle purpose
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/gathered_cle_somatic_exome.cwl Branch/Commit ID: 7f9dfad8e45ca096ae738cff646195b2b1ba7d7f |
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schemadef-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/schemadef-wf.cwl Branch/Commit ID: 0184e647cde1bc44279107d6df31b3ebb138769c |