Explore Workflows

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Graph Name Retrieved From View
workflow graph 04-quantification-se-unstranded.cwl

RNA-seq 04 quantification

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/RNA-seq_pipeline/04-quantification-se-unstranded.cwl

Branch/Commit ID: 517487e59d240c197fc91f08d20dadca97a9e121
workflow graph simple_two_step.cwl

https://github.com/ncbi/cwl-demos.git

Path: blast-pipelines/simple_two_step.cwl

Branch/Commit ID: deb45393512c8eb82de1adec82982b439933d7cd
workflow graph Subworkflow that runs cnvkit in single sample mode and returns a vcf file

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/cnvkit_single_sample.cwl

Branch/Commit ID: e56f1024306aeb427d8aae2fff715ed2e8b8f86f
workflow graph 02-trim-pe.cwl

ChIP-seq 02 trimming - reads: PE

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ChIP-seq_pipeline/02-trim-pe.cwl

Branch/Commit ID: 3a4314c66c1eb090e656af5a0d388cec87d65318
workflow graph Varscan Workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/varscan_pre_and_post_processing.cwl

Branch/Commit ID: 40097e1ed094c5b42b68f3db2ff2cbe78c182479
workflow graph Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)

https://github.com/ncbi/pgap.git

Path: bacterial_annot/wf_bacterial_annot_pass2.cwl

Branch/Commit ID: 7319ccfd2108929588bdc266d9df198629dfaa65
workflow graph count-lines1-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/count-lines1-wf.cwl

Branch/Commit ID: 9e7c68c0834645ba53a7e2b5f70d53df9d051c92
workflow graph step-valuefrom3-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/step-valuefrom3-wf.cwl

Branch/Commit ID: 0184e647cde1bc44279107d6df31b3ebb138769c
workflow graph nestedworkflows.cwl

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/examples/nestedworkflows.cwl

Branch/Commit ID: a062055fddcc7d7d9dbc53d28288e3ccb9a800d8
workflow graph Run genomic CMsearch (Rfam rRNA)

https://github.com/ncbi/pgap.git

Path: bacterial_ncrna/wf_gcmsearch.cwl

Branch/Commit ID: 7319ccfd2108929588bdc266d9df198629dfaa65