Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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genomel_cohort_genotyping.cwl
|
https://github.com/uc-cdis/genomel_pipelines.git
Path: genomel/genomel_cohort_genotyping.cwl Branch/Commit ID: 3b9d07ff1dd10e323fbba33026b888b3a269136b |
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Apply filters to VCF file
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/filter_vcf.cwl Branch/Commit ID: 40097e1ed094c5b42b68f3db2ff2cbe78c182479 |
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04-quantification-pe-revstranded.cwl
RNA-seq 04 quantification |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/RNA-seq_pipeline/04-quantification-pe-revstranded.cwl Branch/Commit ID: 517487e59d240c197fc91f08d20dadca97a9e121 |
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fastqtosam_pe.cwl
|
https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/fastqtosam/fastqtosam_pe.cwl Branch/Commit ID: 18affdd927cc388fab2c113dc2ec6df782af2a52 |
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echo-wc.workflowstep.cwl
|
https://github.com/NLeSC/scriptcwl.git
Path: tests/data/echo-wc.workflowstep.cwl Branch/Commit ID: a49148fed2242bfb4d45f0ff44ea52e728db79e9 |
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md5sum-workflow.cwl
|
https://github.com/dockstore-testing/md5sum-checker.git
Path: md5sum/md5sum-workflow.cwl Branch/Commit ID: 728a681c52686fec4a148d75d98ee60ddecbaf22 |
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echo-wc_inline.cwl
Counts words of a message via echo and wc |
https://github.com/NLeSC/scriptcwl.git
Path: tests/data/workflows/echo-wc_inline.cwl Branch/Commit ID: a49148fed2242bfb4d45f0ff44ea52e728db79e9 |
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02-trim-se.cwl
ChIP-seq 02 trimming - reads: SE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ChIP-seq_pipeline/02-trim-se.cwl Branch/Commit ID: 517487e59d240c197fc91f08d20dadca97a9e121 |
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Run tRNAScan
|
https://github.com/ncbi/pgap.git
Path: bacterial_trna/wf_trnascan.cwl Branch/Commit ID: 7319ccfd2108929588bdc266d9df198629dfaa65 |
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adapter for sequence_align_and_tag
Some workflow engines won't stage files in our nested structure, so parse it out here |
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: 6f9f8a2057c6a9f221a44559f671e87a75c70075 |