Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Functional analyis of sequences that match the 16S SSU

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/16S_taxonomic_analysis.cwl

Branch/Commit ID: 3039744
workflow graph zip_and_index_vcf.cwl

This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.

https://github.com/david4096/OxoG-Dockstore-Tools.git

Path: zip_and_index_vcf.cwl

Branch/Commit ID: develop
workflow graph bam to trimmed fastqs and biscuit alignments

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl

Branch/Commit ID: No_filters_detect_variants
workflow graph ValidateParameterByDataComparision

Validation by comparing simulation parameter with calibration or laboratory data values. Might include statistical evaluation of differences, plotting, or expert review.

 https://github.com/gammasim/workflows.git

Path: workflows/ValidateParameterByDataComparision.cwl

Branch/Commit ID: main
workflow graph snapanalysis_setup_and_analyze.cwl

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: steps/snapanalysis_setup_and_analyze.cwl

Branch/Commit ID: 4b2af54
workflow graph tt_blastn_wnode

https://github.com/ncbi/pgap.git

Path: task_types/tt_blastn_wnode.cwl

Branch/Commit ID: master
workflow graph protein_extract

https://github.com/ncbi/pgap.git

Path: progs/protein_extract.cwl

Branch/Commit ID: master
workflow graph annotator_sub_wf.cwl

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git

Path: annotator_sub_wf.cwl

Branch/Commit ID: master
workflow graph per_cluster_workflow.cwl

https://github.com/FarahZKhan/scalability-reproducibility-chapter.git

Path: CWL/per_cluster_workflow.cwl

Branch/Commit ID: ProvCaptureDemo
workflow graph workflow_docker.cwl

[![Docker Repository on Quay](https://quay.io/repository/ratschlab/workflow-experiment/status \"Docker Repository on Quay\")](https://quay.io/repository/ratschlab/workflow-experiment) Very simple and very artifical workflow to experiment with containers and cwl.

https://github.com/ratschlab/tools-cwl-workflow-experiments.git

Path: cwl/workflow_docker.cwl

Branch/Commit ID: master