Explore Workflows
View already parsed workflows here or click here to add your own
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pindel parallel workflow
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/subworkflows/pindel.cwl Branch/Commit ID: No_filters_detect_variants |
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scRNA-seq pipeline using Salmon and Alevin
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: pipeline.cwl Branch/Commit ID: baee233 |
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wf_get_peaks_scatter_se.cwl
The \"main\" workflow. Takes fastq files generated using the seCLIP protocol (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5991800/) and outputs candidate RBP binding regions (peaks). runs: wf_get_peaks_se.cwl through scatter across multiple samples. |
https://github.com/yeolab/eclip.git
Path: cwl/wf_get_peaks_scatter_se.cwl Branch/Commit ID: master |
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MACE ChIP-exo peak caller workflow for single-end samples
This workflow execute peak caller and QC from ChIP-exo for single-end samples using MACE |
https://gitlab.com/r78v10a07/cwl-workflow.git
Path: workflows/ChIP-exo/peak-caller-MACE-SE.cwl Branch/Commit ID: master |
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bulk-atac-seq-pipeline.cwl
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https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git
Path: bulk-atac-seq-pipeline.cwl Branch/Commit ID: 102d8cb |
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cnv.cwl
Copynumber variation workflow, runs ADTEx and Varscan |
https://github.com/BD2KGenomics/dockstore_workflow_cnv.git
Path: cnv.cwl Branch/Commit ID: v1.0.0 |
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io-int-optional-wf.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/io-int-optional-wf.cwl Branch/Commit ID: master |
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validate_interleaved_fq.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/validate_interleaved_fq.cwl Branch/Commit ID: 0.4.1 |
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cnv_codex
CNV CODEX calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/cnv_codex.cwl Branch/Commit ID: 1.0.6 |
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wf-alignment.cwl
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https://github.com/bcbio/bcbio_validation_workflows.git
Path: NA24385-sv/NA24385-sv-workflow/wf-alignment.cwl Branch/Commit ID: master |
