Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Unaligned BAM to BQSR

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bam_to_bqsr.cwl

Branch/Commit ID: 40097e1ed094c5b42b68f3db2ff2cbe78c182479
workflow graph adapter for sequence_align_and_tag

Some workflow engines won't stage files in our nested structure, so parse it out here

 https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl

Branch/Commit ID: 26806d99f8e2a241715fd081e712d4e3763db5b8
workflow graph 03-map-pe.cwl

ATAC-seq 03 mapping - reads: PE

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/03-map-pe.cwl

Branch/Commit ID: 517487e59d240c197fc91f08d20dadca97a9e121
workflow graph Unaligned to aligned BAM

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/align.cwl

Branch/Commit ID: 40097e1ed094c5b42b68f3db2ff2cbe78c182479
workflow graph bam to trimmed fastqs and biscuit alignments

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl

Branch/Commit ID: 0b0ad1a54f0f6849dc645449b079470448a23095
workflow graph 03-map-se-blacklist-removal.cwl

ATAC-seq 03 mapping - reads: SE - blacklist removal

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/03-map-se-blacklist-removal.cwl

Branch/Commit ID: 517487e59d240c197fc91f08d20dadca97a9e121
workflow graph assembly.cwl

https://github.com/vetscience/Assemblosis.git

Path: Run/assembly.cwl

Branch/Commit ID: c498607f21124d2f3787a21c0d554375799170a7
workflow graph cwlsite.cwl

https://github.com/common-workflow-language/cwl-website.git

Path: site/cwlsite.cwl

Branch/Commit ID: 0ca6132e45e02571d575a8c113cdec98b298041d
workflow graph genomel_cohort_genotyping.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/genomel_cohort_genotyping.cwl

Branch/Commit ID: 3b9d07ff1dd10e323fbba33026b888b3a269136b
workflow graph Apply filters to VCF file

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/filter_vcf.cwl

Branch/Commit ID: 40097e1ed094c5b42b68f3db2ff2cbe78c182479