Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph map medium and long reads (greater than 100 bp) against reference genome

https://github.com/common-workflow-library/bio-cwl-tools.git

Path: bwa/BWA-Mem2-paired.cwl

Branch/Commit ID: 1bfe9fc07978c8463399eec690798effb8431c35
workflow graph wrf_workflow.cwl

https://github.com/UoMResearchIT/wrf_emep_cwl_linear_workflow.git

Path: workflows/wrf_workflow.cwl

Branch/Commit ID: 70c6a6016eeb4434a3ad82af7908b83d4ea37ce7
workflow graph somatic_exome: exome alignment and somatic variant detection

somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml

https://github.com/litd/analysis-workflows.git

Path: definitions/pipelines/somatic_exome.cwl

Branch/Commit ID: 336f7d1af649f42543baa6be2594cd872919b5b5
workflow graph exome alignment and tumor-only variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/tumor_only_exome.cwl

Branch/Commit ID: 5fda2d9eb52a363bd51011b3851c2afb86318c0c
workflow graph rest.cwl

https://github.com/yuandou168/FL_workflows.git

Path: workflows/rest.cwl

Branch/Commit ID: 0f9e76d981ca7b100fb9e170519b427926e590a0
workflow graph dragen-germline-pipeline__4.2.4.cwl

https://github.com/umccr/cwl-ica.git

Path: workflows/dragen-germline-pipeline/4.2.4/dragen-germline-pipeline__4.2.4.cwl

Branch/Commit ID: 74bd1b74b5749968b20de2d7d47ff96b9036a8b7
workflow graph SetTelescopeShadowingParameters

Derive parameters relevant for shadowing components of the telescopes.

 https://github.com/gammasim/workflows.git

Path: workflows/SetTelescopeShadowingParameters.cwl

Branch/Commit ID: 789752af87eb190387ff2acb4c95c7a5cdb961e7
workflow graph pass-unconnected.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/pass-unconnected.cwl

Branch/Commit ID: c7c97715b400ff2194aa29fc211d3401cea3a9bf
workflow graph sequence (bam or fastqs) to trimmed fastqs

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/sequence_to_trimmed_fastq.cwl

Branch/Commit ID: 31a179d7a2f2ac86bfd7fcc4dc79832c3739ae76
workflow graph basename-fields-test.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/basename-fields-test.cwl

Branch/Commit ID: c7c97715b400ff2194aa29fc211d3401cea3a9bf