Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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02-trim-se.cwl
RNA-seq 02 trimming - reads: SE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/RNA-seq_pipeline/02-trim-se.cwl Branch/Commit ID: 24fc8e7043b9603c709366c05eeb0f210149feee |
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01-qc-se.cwl
RNA-seq 01 QC - reads: SE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/RNA-seq_pipeline/01-qc-se.cwl Branch/Commit ID: 24fc8e7043b9603c709366c05eeb0f210149feee |
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Per-chromosome pindel
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: 6a55118f915e24d2ad008c93a02d9de5643f5511 |
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varscan somatic workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: 6a55118f915e24d2ad008c93a02d9de5643f5511 |
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bgzip and index VCF
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: 6a55118f915e24d2ad008c93a02d9de5643f5511 |
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05-quantification.cwl
ChIP-seq - Quantification - samples: treatment |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ChIP-seq_pipeline/05-quantification.cwl Branch/Commit ID: ffdc6d7b155fe301cd49b6e499097cce966159ef |
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02-trim-se.cwl
RNA-seq 02 trimming - reads: SE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/RNA-seq_pipeline/02-trim-se.cwl Branch/Commit ID: 3a4314c66c1eb090e656af5a0d388cec87d65318 |
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04-quantification-se-stranded.cwl
RNA-seq 04 quantification |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/RNA-seq_pipeline/04-quantification-se-stranded.cwl Branch/Commit ID: 3a4314c66c1eb090e656af5a0d388cec87d65318 |
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process VCF workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/strelka_process_vcf.cwl Branch/Commit ID: 6a55118f915e24d2ad008c93a02d9de5643f5511 |
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05-quantification-with-control.cwl
ChIP-seq - Quantification - samples: treatment and control |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ChIP-seq_pipeline/05-quantification-with-control.cwl Branch/Commit ID: 0c7a51100908034e82ac008ac206d94ff8b011cd |
