Explore Workflows

https://github.com/YeoLab/eclip.git

Path: cwl/wf_get_peaks_se.cwl

Branch/Commit ID: master

This workflow takes in single-end reads, and performs the following steps in order: demux_se.cwl (does not actually demux for single end, but mirrors the paired-end processing protocol)

https://github.com/yeolab/eclip.git

Path: cwl/wf_fastqc.cwl

Branch/Commit ID: master

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/SSU-from-tablehits.cwl

Branch/Commit ID: 3039744

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter.git

Path: preprocessor_for_oxog.cwl

Branch/Commit ID: master

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: pipeline.cwl

Branch/Commit ID: cee6caf

Test workflow

https://github.com/denis-yuen/dockstore_workflow_cnv3.git

Path: workflow/cnv.cwl

Branch/Commit ID: master

\"Main workflow for Metagenome and Metatranscriptome Annotation related CWL file: ./Tools/00_fastp.cwl ./Tools/05_bwa_mem_index.cwl ./Tools/13_subread.cwl ./Workflow/annotation_sw.cwl ./Workflow/megahit_prodigal_sw.cwl ./Workflow/metagenomic_contig_mapping_sw.cwl\"

https://github.com/RyoMameda/ComplexMicrobiome_GeneExpression_CWL.git

Path: Workflow/main_w.cwl

Branch/Commit ID: main

https://github.com/CERIT-SC/fireprot.git

Path: multimutants.cwl

Branch/Commit ID: master

CNV CODEX calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/cnv_codex.cwl

Branch/Commit ID: 1.0.9

https://github.com/chenlab-sj/M2A.git

Path: cwl/m2a.cwl

Branch/Commit ID: master