Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	umi molecular alignment fastq workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/alignment_umi_molecular.cwl Branch/Commit ID: adcae308fdccaa1190083616118dfadb4df65dca
	etl.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/fastq_readgroup_stats/etl.cwl Branch/Commit ID: a3eec6c1081d28efe00a0d269fb41303acc4ccdd
	hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather	https://github.com/ncbi/pgap.git Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl Branch/Commit ID: be9d12a3f8e1924183a1dc6a0bda6ada4195ca71
	strelka workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/strelka_and_post_processing.cwl Branch/Commit ID: c235dc6d623879a6c4f5fb307f545c9806eb2d23
	bact_get_kmer_reference	https://github.com/ncbi/pgap.git Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: b4a6e46405c08e0b14ad92f0ab38bcc4a69caa5c
	wffail.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/wffail.cwl Branch/Commit ID: 83038feb2a6fc3bab952e1ecc2a11bfbc8c557b4
	PCA - Principal Component Analysis Principal Component Analysis -------------- Principal component analysis (PCA) is a statistical procedure that uses an orthogonal transformation to convert a set of observations of possibly correlated variables (entities each of which takes on various numerical values) into a set of values of linearly uncorrelated variables called principal components. The calculation is done by a singular value decomposition of the (centered and possibly scaled) data matrix, not by using eigen on the covariance matrix. This is generally the preferred method for numerical accuracy.	https://github.com/datirium/workflows.git Path: workflows/pca.cwl Branch/Commit ID: c602e3cdd72ff904dd54d46ba2b5146eb1c57022
	Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: 343cb00abda2bc06daf9a32e1386c835f324ae6e
	umi per-lane alignment subworkflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/umi_alignment.cwl Branch/Commit ID: 44ada20f3eeb59005d5bd999d2435102e9bae991
	Bisulfite QC tools	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bisulfite_qc.cwl Branch/Commit ID: c6bbd4cdd612b3b5cc6e9000df4800c21e192bf5