Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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uparseRenameWithMetadata.cwl
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https://github.com/h3abionet/h3abionet16S.git
Path: workflows-cwl/uparseRenameWithMetadata.cwl Branch/Commit ID: master |
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cnv_codex
CNV CODEX calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/cnv_codex.cwl Branch/Commit ID: 1.0.6 |
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blast-cc-flow.cwl
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https://github.com/betisb/InputParser.git
Path: cwl/blast-cc-flow.cwl Branch/Commit ID: master |
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wf_rescue_ratio_1input.cwl
Calculates the rescue ratio (see Gabe's protocols paper), given two eCLIP IP samples and 2 size-matched input samples. Also returns the reproducible peaks given these two samples. This is different from the 1input workflow in that each INPUT is first merged together and is used downstream instead of the 1input version, which remains unmodified. Merged inputs are NOT used in calculating true reproducible peaks. |
https://github.com/YeoLab/merge_peaks.git
Path: cwl/wf_rescue_ratio_1input.cwl Branch/Commit ID: master |
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pymethylprocess.cwl
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https://github.com/Christensen-Lab-Dartmouth/PyMethylProcess.git
Path: cwl/workflows/pymethylprocess.cwl Branch/Commit ID: master |
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Calculate FDA-requested metrics on all aligned and unaligned sequence files
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/generate_fda_metrics.cwl Branch/Commit ID: master |
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hello-workflow.cwl
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https://github.com/inab/hello-workflows.git
Path: cwl/hello-workflow.cwl Branch/Commit ID: main |
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md5-validate.cwl
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https://github.com/mr-c/4dn-dcic-pipelines-cwl.git
Path: cwl_awsem_v1/md5-validate.cwl Branch/Commit ID: dev2 |
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picard_markduplicates
Mark duplicates |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/picard_markduplicates.cwl Branch/Commit ID: 3bb03c9b |
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final_filtering
Final filtering |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/final_filtering.cwl Branch/Commit ID: 1.1.3 |
