Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pvacseq.cwl Branch/Commit ID: b7d9ace34664d3cedb16f2512c8a6dc6debfc8ca |
|
|
|
prep.cwl
|
https://git.astron.nl/RD/LINC.git
Path: workflows/linc_target/prep.cwl Branch/Commit ID: 035f66ec0f260628424c9621aed97f7cbf35e737 |
|
|
|
Build Bowtie indices
Workflow runs [Bowtie](http://bowtie-bio.sourceforge.net/tutorial.shtml) v1.2.0 (12/30/2016) to build indices for reference genome provided in a single FASTA file as fasta_file input. Generated indices are saved in a folder with the name that corresponds to the input genome |
https://github.com/datirium/workflows.git
Path: workflows/bowtie-index.cwl Branch/Commit ID: a1f6ca50fcb0881781b3ba0306dd61ebf555eaba |
|
|
|
AltAnalyze CellHarmony
AltAnalyze CellHarmony ====================== |
https://github.com/datirium/workflows.git
Path: workflows/altanalyze-cellharmony.cwl Branch/Commit ID: c6bfa0de917efb536dd385624fc7702e6748e61d |
|
|
|
Running cellranger count and lineage inference
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/single_cell_rnaseq.cwl Branch/Commit ID: da335d9963418f7bedd84cb2791a0df1b3165ffe |
|
|
|
strelka workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/strelka_and_post_processing.cwl Branch/Commit ID: da335d9963418f7bedd84cb2791a0df1b3165ffe |
|
|
|
RNA-Seq alignment and transcript/gene abundance workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/rnaseq.cwl Branch/Commit ID: 5cb188131f786ed33156e2f0e3dd63ab9c04245d |
|
|
|
bacterial_kmer
|
https://github.com/ncbi/pgap.git
Path: bacterial_kmer/wf_bacterial_kmer.cwl Branch/Commit ID: 17bae57a1f00f5c6db8f3a82d86262f12b8153cf |
|
|
|
kmer_top_n_extract
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_top_n_extract.cwl Branch/Commit ID: 4a44218a713aecc488359be275409414ae8c1434 |
|
|
|
basename-fields-test.cwl
|
https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/basename-fields-test.cwl Branch/Commit ID: b82ce7ae901a54c7a062fd5eefd8d5ceb5a4d684 |
