Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	exome alignment and somatic variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome_mouse.cwl Branch/Commit ID: 22fce2dbdada0c4135b6f0677f78535cf980cb07
	varscan somatic workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: 1437aed13d240fd624f78df2c7efb096c5079d73
	env-wf1.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/env-wf1.cwl Branch/Commit ID: c6cced7a2e6389d2eb43342e702677ccb7c7497c
	cache_asnb_entries	https://github.com/ncbi/pgap.git Path: task_types/tt_cache_asnb_entries.cwl Branch/Commit ID: 72804b6506c9f54ec75627f82aafe6a28d7a49fa
	heatmap-prepare.cwl Workflow runs homer-make-tag-directory.cwl tool using scatter for the following inputs - bam_file - fragment_size - total_reads `dotproduct` is used as a `scatterMethod`, so one element will be taken from each array to construct each job: 1) bam_file[0] fragment_size[0] total_reads[0] 2) bam_file[1] fragment_size[1] total_reads[1] ... N) bam_file[N] fragment_size[N] total_reads[N] `bam_file`, `fragment_size` and `total_reads` arrays should have the identical order.	https://github.com/datirium/workflows.git Path: tools/heatmap-prepare.cwl Branch/Commit ID: 92f1a6da9c4f85fb51340b01b32373a50fde0891
	hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather	https://github.com/ncbi/pgap.git Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl Branch/Commit ID: 733ab7198a66a0153d0f03c3022ab53c17325ff8
	gather AML trio outputs	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/aml_trio_cle_gathered.cwl Branch/Commit ID: 22fce2dbdada0c4135b6f0677f78535cf980cb07
	sc_atac_seq_initial_analysis.cwl	https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git Path: sc-atac-seq-pipeline/steps/sc_atac_seq_initial_analysis.cwl Branch/Commit ID: 68e0cc1be35751f5ef5958050742ddfffd564d3c
	extract_gencoll_ids	https://github.com/ncbi/pgap.git Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: 733ab7198a66a0153d0f03c3022ab53c17325ff8
	samtools_mpileup_subpipeline.cwl	https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git Path: janis_pipelines/wgs_somatic/cwl/tools/samtools_mpileup_subpipeline.cwl Branch/Commit ID: d919f2dd335da64a4fa352df9ea1b27ba13edad8