Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	cond-wf-005.1.cwl	https://github.com/common-workflow-language/cwl-utils.git Path: testdata/cond-wf-005.1.cwl Branch/Commit ID: 15c8467d6d3c31a95ccc682095cf34aad125ca8c
	kmer_build_tree	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_build_tree.cwl Branch/Commit ID: dc6014dc7c1f160ec4ae3d5a57388a6dceaacbc5
	cluster_blastp_wnode and gpx_qdump combined	https://github.com/ncbi/pgap.git Path: task_types/tt_cluster_and_qdump.cwl Branch/Commit ID: 68b828ac482956a03325623d817780986f34fb31
	output-arrays-file-wf.cwl	https://github.com/common-workflow-language/cwl-v1.2.git Path: tests/output-arrays-file-wf.cwl Branch/Commit ID: ad91c844b5adfef514c059af364e20afc935e598
	bulk_process.cwl	https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git Path: steps/bulk_process.cwl Branch/Commit ID: d0e845df600fff7944943e2520db7a0cda8d00db
	wgs alignment and tumor-only variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/wgs.cwl Branch/Commit ID: 9ad798f18104eb4a9c6c118f42691b9f5d9efd19
	samples_fillout_index_workflow.cwl Wrapper to run indexing on all bams before submitting for samples fillout Includes secondary input channels to allow for including .bam files that do not have indexes Also include other extra handling needed for files that might not meet needs for the fillout workflow	https://github.com/mskcc/pluto-cwl.git Path: cwl/samples_fillout_index_workflow.cwl Branch/Commit ID: 3bc4fab5503e58521ed0eb9c0d035ac18460dc13
	Subworkflow to allow calling cnvkit with cram instead of bam files	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cram_to_cnvkit.cwl Branch/Commit ID: a9133c999502acf94b433af8d39897e6c2cdf65f
	step_valuefrom5_wf_with_id_v1_1.cwl	https://github.com/common-workflow-language/cwl-utils.git Path: testdata/step_valuefrom5_wf_with_id_v1_1.cwl Branch/Commit ID: 139c64b55f7693d22e6646b8afe585f90da11dcb
	Bisulfite alignment and QC	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/bisulfite.cwl Branch/Commit ID: 27aa22e6f5d2fca75abca42d52867259fd0725b9