Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	gcaccess_from_list	https://github.com/ncbi/pgap.git Path: task_types/tt_gcaccess_from_list.cwl Branch/Commit ID: a2d6cd4c53bf3501f6bd79edebb7ca30bba8456f
	Run pindel on provided region	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: adcae308fdccaa1190083616118dfadb4df65dca
	Feature expression merge - combines feature expression from several experiments Feature expression merge - combines feature expression from several experiments ========================================================================= Workflows merges RPKM (by default) gene expression from several experiments based on the values from GeneId, Chrom, TxStart, TxEnd and Strand columns (by default). Reported unique columns are renamed based on the experiments names.	https://github.com/datirium/workflows.git Path: workflows/feature-merge.cwl Branch/Commit ID: 7ae3b75bbe614e59cdeaba06047234a6c40c0fe9
	scatter-valuefrom-wf1.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/scatter-valuefrom-wf1.cwl Branch/Commit ID: 5ae5798f1c0c8d2178986b77cfd74edff510877a
	Build Bismark indices Copy fasta_file file to the folder and run run bismark_genome_preparation script to prepare indices for Bismark Methylation Analysis. Bowtie2 aligner is used by default. The name of the output indices folder is equal to the genome input.	https://github.com/datirium/workflows.git Path: workflows/bismark-index.cwl Branch/Commit ID: b5e16e359007150647b14dc6e038f4eb8dccda79
	etl.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/fastq_readgroup_stats/etl.cwl Branch/Commit ID: b110a23e2efaaadfd4feca4f9e130946d1c5418d
	Replace legacy AML Trio Assay	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/aml_trio_cle.cwl Branch/Commit ID: adcae308fdccaa1190083616118dfadb4df65dca
	Tumor-Only Detect Variants workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/tumor_only_detect_variants.cwl Branch/Commit ID: 480c438a6a7e78c624712aec01bc4214d2bc179c
	tt_univec_wnode.cwl	https://github.com/ncbi/pgap.git Path: task_types/tt_univec_wnode.cwl Branch/Commit ID: a2d6cd4c53bf3501f6bd79edebb7ca30bba8456f
	Chipseq alignment with qc and creating homer tag directory	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/chipseq.cwl Branch/Commit ID: cc3e7f1ccfdc7101c22bf88792608504eea7d53a