Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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dfast-filelist-outputdir.cwl
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https://github.com/nigyta/bact_genome.git
Path: cwl/workflow/dfast-filelist-outputdir.cwl Branch/Commit ID: master |
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rRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/rRNA_selection.cwl Branch/Commit ID: d3b8e45 |
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compile1.cwl#main
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https://github.com/common-workflow-language/workflows.git
Path: workflows/compile/compile1.cwl Branch/Commit ID: feature/feature-GATK-Yassine Packed ID: main |
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metabarcode (gene amplicon) analysis for fastq files
protein - qc, preprocess, annotation, index, abundance |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/metabarcode-fastq.workflow.cwl Branch/Commit ID: master |
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QIIME2 Step 3
QIIME2 Alpha/beta diversity analysis and Alpha rarefaction plotting |
https://github.com/bespin-workflows/16s-qiime2.git
Path: 16s-step3-alpha-beta-analysis.cwl Branch/Commit ID: develop |
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rnaseq-alignment-circRNA-multiple-samples
This workflow aligns multiple samples using STAR for paired-end samples to be used in circRNA pipeline |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/Alignments/star-alignment-circRNA-multiple-samples.cwl Branch/Commit ID: master |
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kf_STAR_Solo_10x_alignment_wf.cwl
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https://github.com/kids-first/kf-dev-single-cell-rna.git
Path: workflows/kf_STAR_Solo_10x_alignment_wf.cwl Branch/Commit ID: master |
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Merge, annotate, and generate a TSV for SVs
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/merge_svs.cwl Branch/Commit ID: downsample_and_recall |
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GATK-Sub-Workflow-h3abionet-indel-no-vqsr.cwl
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https://github.com/h3abionet/h3agatk.git
Path: workflows/GATK/GATK-Sub-Workflow-h3abionet-indel-no-vqsr.cwl Branch/Commit ID: 1.0.1 |
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03-map-se.cwl
ATAC-seq 03 mapping - reads: SE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/03-map-se.cwl Branch/Commit ID: master |
