Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph pcawg_annotate_wf.cwl

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json `

https://github.com/icgc-tcga-pancancer/pcawg-snv-indel-annotation.git

Path: pcawg_annotate_wf.cwl

Branch/Commit ID: develop
workflow graph wffail.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/wffail.cwl

Branch/Commit ID: 9b603df77aeb586d122daa2c6c6b1ae40cd54f21
workflow graph umi molecular alignment workflow

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/molecular_qc.cwl

Branch/Commit ID: low-vaf
workflow graph Detect Variants workflow

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/detect_variants.cwl

Branch/Commit ID: downsample_and_recall
workflow graph checker_workflow_wrapping_workflow.cwl

This demonstrates how to wrap a \"real\" workflow with a checker workflow that runs both the tool and a tool that performs verification of results

https://github.com/dockstore-testing/dockstore-workflow-md5sum-unified.git

Path: checker_workflow_wrapping_workflow.cwl

Branch/Commit ID: develop
workflow graph standard_bam_to_collapsed_qc.cwl

This is a workflow to go from standard bams to collapsed bams and QC results.

https://github.com/mskcc/ACCESS-Pipeline.git

Path: workflows/subworkflows/standard_bam_to_collapsed_qc.cwl

Branch/Commit ID: master
workflow graph module-4

https://github.com/mskcc/roslin-variant.git

Path: setup/cwl/module-4.cwl

Branch/Commit ID: 2.4.x
workflow graph main.cwl

https://github.com/kyusque/abmp_log_dump2pieda.git

Path: main.cwl

Branch/Commit ID: master
workflow graph wf-loadContents4.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/wf-loadContents4.cwl

Branch/Commit ID: main
workflow graph bwa_mem

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/bwa_mem.cwl

Branch/Commit ID: master