Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Unaligned BAM to BQSR and VCF	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl Branch/Commit ID: e649fcb1092905c539be026a3f23c82d5b0871d2
	kmer_top_n_extract	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_top_n_extract.cwl Branch/Commit ID: 16e3915d2a357e2a861b30911c832e5ddc0c1784
	sorter.cwl	https://github.com/hubmapconsortium/spatial-transcriptomics-pipeline.git Path: steps/sorter.cwl Branch/Commit ID: 5b866e480fb557cf53d619a22068c73548e337d5
	count-lines5-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/count-lines5-wf.cwl Branch/Commit ID: 0e98de8f692bb7b9626ed44af835051750ac20cd
	Cellranger Reanalyze Cellranger Reanalyze	https://github.com/datirium/workflows.git Path: workflows/cellranger-reanalyze.cwl Branch/Commit ID: 22880e0f41d0420a17d643e8a6e8ee18165bbfbf
	conflict-wf.cwl#collision	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/conflict-wf.cwl Branch/Commit ID: 09323506da219ba3ddb5313bd83022b52cac9adc Packed ID: collision
	Unaligned BAM to BQSR and VCF	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl Branch/Commit ID: 479c9b3e3fa32ec9c7cd4073cfbccc675fd254d9
	transform_pack.cwl#fastq_clean_pe.cwl	https://github.com/NCI-GDC/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/transform_pack.cwl Branch/Commit ID: 0c1a40ea1efb1656644ccec0b7abe659539340e7 Packed ID: fastq_clean_pe.cwl
	extract_gencoll_ids	https://github.com/ncbi/pgap.git Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: 9144d08fa7f4e852498761481dceab477167fa65
	sec-wf-out.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/sec-wf-out.cwl Branch/Commit ID: fd6e054510e2bb65eed4069a3a88013d7ecbb99c