Explore Workflows
View already parsed workflows here or click here to add your own
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cnv_manta
CNV Manta calling |
Path: structuralvariants/subworkflows/cnv_manta.cwl Branch/Commit ID: 3bb03c9b |
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scatter-valuefrom-wf3.cwl#main
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Path: tests/scatter-valuefrom-wf3.cwl Branch/Commit ID: main Packed ID: main |
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collate_unique_SSU_headers.cwl
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Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: 6c856cd |
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wf-variantcall.cwl
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Path: wes-agha-test/wes_chr21_test-workflow-gcp/wf-variantcall.cwl Branch/Commit ID: master |
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samples_fillout_index_batch_workflow.cwl
Wrapper to run bam indexing on all bams before submitting for samples fillout Also includes steps to pre-filter some maf input files NOTE: each sample in a sample_group must have a .bam file, and there must be a minumum of 1 .maf file amoungst samples in the same sample_group this means that for each sample in the sample_group, a .bam is required but a .maf is optional as long as one sample in the group has a .maf this also means that singleton sample groups, or a sample group with only one sample, MUST include a .maf file; singletons cannot lack a .maf NOTE: all .maf files must be valid, at a minimum they must have a header and at least one variant if a sample has no variants in its .maf file, or has an empty .maf file, then it should NOT have a maf_file entry associated with it |
Path: cwl/samples_fillout_index_batch_workflow.cwl Branch/Commit ID: master |
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snpeff-workflow.cwl
Annotate variants provided in a gziped VCF using SnpEff |
Path: snpeff-workflow.cwl Branch/Commit ID: master |
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Chunked version of phmmer-v3.2.cwl
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Path: workflows/phmmer-v3.2-chunked-wf.cwl Branch/Commit ID: cwlexec |
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Per-chromosome pindel
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Path: pindel/pindel_cat.cwl Branch/Commit ID: master |
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sc_atac_seq_prep_process_analyze.cwl
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Path: sc_atac_seq_prep_process_analyze.cwl Branch/Commit ID: 7fed36f |
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exomeseq-03-organizedirectories.cwl
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Path: subworkflows/exomeseq-03-organizedirectories.cwl Branch/Commit ID: gatk4-fixes |
