Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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schemadef-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/schemadef-wf.cwl Branch/Commit ID: master |
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pcawg_annotate_wf.cwl
This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json ` |
https://github.com/ICGC-TCGA-PanCancer/pcawg-snv-indel-annotation.git
Path: pcawg_annotate_wf.cwl Branch/Commit ID: develop |
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qiime2 rarefaction visualization
Alpha rarefaction plotting from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step3-alpha-analysis.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: qiime2-07-alpha-rarefaction.cwl |
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Per-chromosome pindel
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: No_filters_detect_variants |
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count-lines17-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/count-lines17-wf.cwl Branch/Commit ID: main |
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metrics.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/dnaseq/metrics.cwl Branch/Commit ID: 1.1 |
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wes_alignment.cwl
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https://github.com/sylviaJian/test_pipelines.git
Path: wes_alignment.cwl Branch/Commit ID: main |
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STAR-Alignment-PE
This workflow aligns the fastq files using STAR for no spliced genomes |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/Alignments/star-alignment-nosplice.cwl Branch/Commit ID: master |
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rRNA_selection.cwl
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: tools/rRNA_selection.cwl Branch/Commit ID: 5dc7c5c |
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gvcf-distr.cwl
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https://github.com/Sentieon/Sentieon-cwl.git
Path: stage/gvcf-distr.cwl Branch/Commit ID: master |
