Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
gatk-4.0.0.0-genomics-db-and-genotypegvcfs-per-interval-list.cwl
|
https://github.com/wtsi-hgi/arvados-pipelines.git
Path: cwl/workflows/gatk-4.0.0.0-genomics-db-and-genotypegvcfs-per-interval-list.cwl Branch/Commit ID: master |
|
|
|
Example of setting up a simulation system
Common Workflow Language example that illustrate the process of setting up a simulation system containing a protein, step by step, using the BioExcel Building Blocks library (biobb). The particular example used is the Lysozyme protein (PDB code 1AKI). |
https://github.com/bioexcel/biobb_wf_cwl_tutorial.git
Path: biobb_wf_cwl_tutorial/examples/BioExcel-CWL-MDSetup.cwl Branch/Commit ID: master |
|
|
|
Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)
|
https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_orf_hmms.cwl Branch/Commit ID: test |
|
|
|
step-valuefrom2-wf.cwl
|
https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/step-valuefrom2-wf.cwl Branch/Commit ID: master |
|
|
|
maw.cwl
multiple mzml files, all with the same condition |
https://github.com/zmahnoor14/MAW.git
Path: cwl/maw.cwl Branch/Commit ID: main |
|
|
|
dfast-filelist.cwl
|
https://github.com/nigyta/bact_genome.git
Path: cwl/workflow/dfast-filelist.cwl Branch/Commit ID: master |
|
|
|
io-union-input-default-wf.cwl
|
https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/io-union-input-default-wf.cwl Branch/Commit ID: master |
|
|
|
Instac stage-in
Stage-in using Instac |
https://github.com/EOEPCA/app-vegetation-index.git
Path: instac.cwl Branch/Commit ID: master Packed ID: main |
|
|
|
Varscan Workflow
|
https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: downsample_and_recall |
|
|
|
Transcripts annotation workflow
|
https://github.com/mscheremetjew/workflow-is-cwl.git
Path: workflows/TranscriptsAnnotation-i5only-wf.cwl Branch/Commit ID: cwlexec |
