Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Runs InterProScan on batches of sequences to retrieve functional annotations.
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https://github.com/mscheremetjew/workflow-is-cwl.git
Path: workflows/InterProScan-v5-chunked-wf.cwl Branch/Commit ID: assembly |
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rhapsody_pipeline_2.0.cwl#VDJ_Analyze_Reads_TCR.cwl
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https://github.com/Chi-CRL/cwl_check_workflow.git
Path: rhapsody_pipeline_2.0.cwl Branch/Commit ID: main Packed ID: VDJ_Analyze_Reads_TCR.cwl |
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per-sample.cwl
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https://github.com/ddbj/jga-analysis.git
Path: per-sample/Workflows/per-sample.cwl Branch/Commit ID: main |
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03-map-pe.cwl
ChIP-seq 03 mapping - reads: PE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ChIP-seq_pipeline/03-map-pe.cwl Branch/Commit ID: master |
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marianas_collapsing_workflow.cwl
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https://github.com/mskcc/ACCESS-Pipeline.git
Path: workflows/marianas/marianas_collapsing_workflow.cwl Branch/Commit ID: master |
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facets.cwl
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https://github.com/mskcc/roslin-cwl.git
Path: modules/pair/facets.cwl Branch/Commit ID: master |
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Metagenomic Binning from Assembly
Workflow for Metagenomics from raw reads to annotated bins.<br> Summary - MetaBAT2 (binning) - CheckM (bin completeness and contamination) - GTDB-Tk (bin taxonomic classification) - BUSCO (bin completeness) **All tool CWL files and other workflows can be found here:**<br> Tools: https://git.wur.nl/unlock/cwl/-/tree/master/cwl<br> Workflows: https://git.wur.nl/unlock/cwl/-/tree/master/cwl/workflows<br> The dependencies are either accessible from https://unlock-icat.irods.surfsara.nl (anonymous,anonymous)<br> and/or<br> By using the conda / pip environments as shown in https://git.wur.nl/unlock/docker/-/blob/master/kubernetes/scripts/setup.sh<br> |
https://git.wur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_metagenomics_binning.cwl Branch/Commit ID: master |
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func_summaries.cwl
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https://github.com/kinow/pipeline-v5.git
Path: workflows/subworkflows/func_summaries.cwl Branch/Commit ID: eosc-life-gos |
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steplevel-resreq.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/steplevel-resreq.cwl Branch/Commit ID: master |
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main.cwl
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https://github.com/ska-sa/den.git
Path: cwl/main.cwl Branch/Commit ID: master |
