Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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validate_interleaved_fq.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/validate_interleaved_fq.cwl Branch/Commit ID: 0.4.1 |
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cluster_blastp_wnode and gpx_qdump combined
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https://github.com/ncbi/pgap.git
Path: task_types/tt_cluster_and_qdump.cwl Branch/Commit ID: master |
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preprocess_vcf.cwl
This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow. |
https://github.com/icgc-tcga-pancancer/oxog-dockstore-tools.git
Path: preprocess_vcf.cwl Branch/Commit ID: 1.0.0 |
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preprocess-illumina.cwl
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https://github.com/fjrmoreews/cwl-workflow-SARS-CoV-2.git
Path: PreProcessing/preprocess-illumina.cwl Branch/Commit ID: master |
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Transcriptome assembly workflow (single-end version)
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https://github.com/mscheremetjew/workflow-is-cwl.git
Path: workflows/TranscriptomeAssembly-wf.single-end.cwl Branch/Commit ID: assembly |
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EMG assembly for paired end Illumina
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-assembly.cwl Branch/Commit ID: 56dafa4 |
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Build Bowtie indices
Workflow runs [Bowtie](http://bowtie-bio.sourceforge.net/tutorial.shtml) v1.2.0 (12/30/2016) to build indices for reference genome provided in a single FASTA file as fasta_file input. Generated indices are saved in a folder with the name that corresponds to the input genome |
https://github.com/datirium/workflows.git
Path: workflows/bowtie-index.cwl Branch/Commit ID: master |
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minibam_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
https://github.com/icgc-tcga-pancancer/oxog-dockstore-tools.git
Path: minibam_sub_wf.cwl Branch/Commit ID: 1.0.0 |
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bacterial_kmer
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https://github.com/ncbi/pgap.git
Path: bacterial_kmer/wf_bacterial_kmer.cwl Branch/Commit ID: master |
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tt_hmmsearch_wnode.cwl
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https://github.com/ncbi/pgap.git
Path: task_types/tt_hmmsearch_wnode.cwl Branch/Commit ID: test |
