Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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workflow.cwl
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https://github.com/NAL-i5K/Organism_Onboarding.git
Path: flow_dispatch/2working_files/workflow.cwl Branch/Commit ID: master |
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Functional analyis of sequences that match the 16S SSU
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: master |
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gdc_rnaseq_main_workflow.cwl
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https://github.com/NCI-GDC/gdc-rnaseq-cwl.git
Path: rnaseq-star-align/subworkflows/gdc_rnaseq_main_workflow.cwl Branch/Commit ID: master |
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platanusB-w-rRNA.cwl
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https://github.com/nigyta/bact_genome.git
Path: cwl/workflow/platanusB-w-rRNA.cwl Branch/Commit ID: master |
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Indices builder from GBOL RDF (TTL)
Workflow to build different indices for different tools from a genome and transcriptome. This workflow expects an (annotated) genome in GBOL ttl format. Steps: - SAPP: rdf2gtf (genome fasta) - SAPP: rdf2fasta (transcripts fasta) - STAR index (Optional for Eukaryotic origin) - bowtie2 index - kallisto index |
https://git.wur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_indexbuilder.cwl Branch/Commit ID: master |
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STAR-RNA-Seq alignment and transcript/gene abundance workflow with Xenosplit
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/rnaseq_star_fusion_with_xenosplit.cwl Branch/Commit ID: master |
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gathered exome alignment and somatic variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/somatic_exome_gathered.cwl Branch/Commit ID: master |
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hi-c-processing-pairs-nore-nonorm.cwl
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https://github.com/mr-c/4dn-dcic-pipelines-cwl.git
Path: cwl_awsem_v1/hi-c-processing-pairs-nore-nonorm.cwl Branch/Commit ID: master |
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kfdrc_alignment_CramOnly_wf.cwl
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https://github.com/cr-ste-justine/chujs-alignment-workflow.git
Path: workflows/kfdrc_alignment_CramOnly_wf.cwl Branch/Commit ID: dev |
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wf_get_peaks_trim_partial_scatter_se.cwl
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https://github.com/YeoLab/eclip.git
Path: cwl/wf_get_peaks_trim_partial_scatter_se.cwl Branch/Commit ID: master |
