Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph bismark-methylation-se.cwl

Bismark Methylation pipeline. We can use indices_folder as genome_folder for bismark_extract_methylation step, because it insludes the original FASTA files too.

https://github.com/Barski-lab/workflows.git

Path: workflows/bismark-methylation-se.cwl

Branch/Commit ID: e706ffe742cfdf713c4315ab2fb56d07f7e688cb
workflow graph tt_hmmsearch_wnode.cwl

https://github.com/ncbi/pgap.git

Path: task_types/tt_hmmsearch_wnode.cwl

Branch/Commit ID: 1ce371c7412debef75edf09e8830d74ac987a668
workflow graph Cell Ranger Aggregate

Cell Ranger Aggregate =====================

https://github.com/datirium/workflows.git

Path: workflows/cellranger-aggr.cwl

Branch/Commit ID: 7ae3b75bbe614e59cdeaba06047234a6c40c0fe9
workflow graph count-lines11-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/count-lines11-wf.cwl

Branch/Commit ID: 2ae8117360a3cd4909d9d3f2b35c30bfffb25d0a
workflow graph sum-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/sum-wf.cwl

Branch/Commit ID: 1eb6bfe3c77aebaf69453a669d21ae7a5a78056f
workflow graph count-lines3-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/count-lines3-wf.cwl

Branch/Commit ID: 2ae8117360a3cd4909d9d3f2b35c30bfffb25d0a
workflow graph Detect Variants workflow

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/detect_variants_mouse.cwl

Branch/Commit ID: 0db1a5f1ceedd4416ac550787c27b99c87dbe985
workflow graph Detect Docm variants

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/docm_cle.cwl

Branch/Commit ID: 76a35e7d885790f30559beb31f3b58770e343afd
workflow graph Nested workflow example

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/double-nested.cwl

Branch/Commit ID: 6cfef62c21330672538fd5e9b45ec888569c0a6f
workflow graph wf_amr_prot.cwl

https://github.com/ncbi/pipelines.git

Path: amr_finder/wf_amr_prot.cwl

Branch/Commit ID: 89cfa59e0914132159c1133352e9f74023d37947