Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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preprocess.cwl
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https://github.com/Epigenomics-Screw/Screw.git
Path: cwl/preprocess.cwl Branch/Commit ID: master |
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CODEX analysis pipeline using Cytokit
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https://github.com/hubmapconsortium/codex-pipeline.git
Path: pipeline.cwl Branch/Commit ID: 221f7c4 |
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aggregate_visualize
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https://github.com/msk-access/qc_generation.git
Path: access_qc__packed.cwl Branch/Commit ID: develop Packed ID: aggregate_visualize.cwl |
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blastp_wnode_naming
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https://github.com/ncbi/pgap.git
Path: task_types/tt_blastp_wnode_naming.cwl Branch/Commit ID: test |
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Spliced RNAseq workflow
Workflow for Spliced RNAseq data Steps: - workflow_illumina_quality: - FastQC (Read Quality Control) - fastp (Read Trimming) - STAR (Read mapping) - featurecounts (transcript read counts) - kallisto (transcript [pseudo]counts) |
https://git.wur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_RNAseq_Spliced.cwl Branch/Commit ID: master |
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collapsed_fastq_to_bam.cwl
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https://github.com/andurill/ACCESS-Pipeline.git
Path: workflows/marianas/collapsed_fastq_to_bam.cwl Branch/Commit ID: 0.0.33_dmp |
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sc_atac_seq_process_and_analyze.cwl
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https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git
Path: steps/sc_atac_seq_process_and_analyze.cwl Branch/Commit ID: 7fed36f |
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count-lines7-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/count-lines7-wf.cwl Branch/Commit ID: main |
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PGAP Pipeline
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https://github.com/slottad/pgap.git
Path: wf_pgap.cwl Branch/Commit ID: master |
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wf_full_IDR_pipeline_1input_scatter.cwl
The main workflow that: produces two reproducible peaks via IDR given two eCLIP samples (1 input, 1 IP each). runs the 'rescue ratio' statistic runs the 'consistency ratio' statistic |
https://github.com/YeoLab/merge_peaks.git
Path: cwl/wf_full_IDR_pipeline_1input_scatter.cwl Branch/Commit ID: master |
