Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
contig construction and protein prediction
\"This workflow performs construction of metagenomic contigs and prediction protein sequences for metagenomic contigs. It executes 2 processes: contig construction and protein prediction. related CWL file: ./Tools/06_bwa_mem.cwl ./Tools/07_samtools_sort.cwl ./Tools/08_samtools_flagstat.cwl\" |
https://github.com/RyoMameda/workflow_cwl.git
Path: Workflow/metagenomic_contig_mapping_sw.cwl Branch/Commit ID: main |
|
|
|
fasta2taxa-plot
Input is a fasta file with n>1 samples, with sample id as sequence identifier prefix, and a sample id file. The workflow calls open otus and assigns taxa using greengenes. The output are taxa plots. |
https://github.com/MG-RAST/qiime-pipeline.git
Path: CWL/Workflows/qiime/join-reads2plot.cwl Branch/Commit ID: master |
|
|
|
Trim and reformat reads (single and paired end version)
|
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/trim_and_reformat_reads.cwl Branch/Commit ID: 71d9c83 |
|
|
|
scatter-two-steps.cwl
|
https://github.com/BiodataAnalysisGroup/intro-to-cwl-docker.git
Path: _includes/cwl/scatter-two-steps.cwl Branch/Commit ID: gh-pages |
|
|
|
Exome QC workflow
|
https://github.com/mnneveau/cancer-genomics-workflow.git
Path: qc/workflow_exome.cwl Branch/Commit ID: master |
|
|
|
CRAM_md5sum.cwl
|
https://github.com/DataBiosphere/topmed-workflows.git
Path: CRAM-no-header-md5sum/md5sum/CRAM_md5sum.cwl Branch/Commit ID: 1.23.0 |
|
|
|
scatter-wf2.cwl
|
https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/scatter-wf2.cwl Branch/Commit ID: master |
|
|
|
Unaligned BAM to BQSR and VCF
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl Branch/Commit ID: 86fbeb95ef85111f3b4c6bc2bba8f06cef64e157 |
|
|
|
Transcripts annotation workflow
|
https://github.com/mscheremetjew/workflow-is-cwl.git
Path: workflows/TranscriptsAnnotation-i5only-wf.cwl Branch/Commit ID: cwlexec |
|
|
|
count-lines3-wf.cwl
|
https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/count-lines3-wf.cwl Branch/Commit ID: main |
