Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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exome alignment and germline variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_exome.cwl Branch/Commit ID: 9a657bc8c462542dc7f57fba9e04dc1669f966ba |
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checker-workflow-wrapping-workflow.cwl
This demonstrates how to wrap a \"real\" tool with a checker workflow that runs both the tool and a tool that performs verification of results |
https://github.com/dockstore-testing/md5sum-checker.git
Path: checker-workflow-wrapping-workflow.cwl Branch/Commit ID: 0ab8667a8fb331ec6d8f181f1c8870d2e8cc74e7 |
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02-peakcall.cwl
DNase-seq 02 quantification |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/DNase-seq_pipeline/02-peakcall.cwl Branch/Commit ID: 7696e7eb27a9251fba53ef4ccacc84cc8f8b0685 |
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Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass2.cwl Branch/Commit ID: ef266744578e2dcbce57c110c6fa3b9eee91e316 |
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exome alignment and germline variant detection, with optitype for HLA typing
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_exome_hla_typing.cwl Branch/Commit ID: 9a657bc8c462542dc7f57fba9e04dc1669f966ba |
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pcr-bottleneck-coef.cwl
ChIP-seq - map - PCR Bottleneck Coefficients |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/map/pcr-bottleneck-coef.cwl Branch/Commit ID: 517487e59d240c197fc91f08d20dadca97a9e121 |
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bam to trimmed fastqs and HISAT alignments
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 9a657bc8c462542dc7f57fba9e04dc1669f966ba |
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1st-workflow.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/examples/1st-workflow.cwl Branch/Commit ID: 5ef2516220cd2ed327ba7966e7d812de969f4eea |
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exome alignment with qc, no bqsr, no verify_bam_id
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/exome_alignment_mouse.cwl Branch/Commit ID: 869b331cfeb9dbd5907498e3eccdebc7c28283e5 |
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bam to trimmed fastqs and HISAT alignments
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: e2a34d2b8c406db9aed8e49e8bdcf36f51444379 |