Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	count-lines2-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/count-lines2-wf.cwl Branch/Commit ID: 0e98de8f692bb7b9626ed44af835051750ac20cd
	etl_http.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/dnaseq/etl_http.cwl Branch/Commit ID: 6698fbd8d0a6155d2008d4e89ab1110fbef9ebbf
	Cellranger reanalyze - reruns secondary analysis performed on the feature-barcode matrix Devel version of Single-Cell Cell Ranger Reanalyze ================================================== Workflow calls \"cellranger aggr\" command to rerun secondary analysis performed on the feature-barcode matrix (dimensionality reduction, clustering and visualization) using different parameter settings. As an input we use filtered feature-barcode matrices in HDF5 format from cellranger count or aggr experiments. Note, we don't pass aggregation_metadata from the upstream cellranger aggr step. Need to address this issue when needed.	https://github.com/datirium/workflows.git Path: workflows/cellranger-reanalyze.cwl Branch/Commit ID: 64f7fe4438898218fd83133efa25251078f5b27e
	default-dir5.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/default-dir5.cwl Branch/Commit ID: 819c81af5449ec912bbbbead042ad66b8d3fd8d4
	wgs alignment with qc	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/wgs_alignment.cwl Branch/Commit ID: 1437aed13d240fd624f78df2c7efb096c5079d73
	align_merge_sas	https://github.com/ncbi/pgap.git Path: task_types/tt_align_merge_sas.cwl Branch/Commit ID: 3e7a3c1cc1ed5164ae0a51a96f20d7c480d1d70b
	Cell Ranger Build Reference Indices Cell Ranger Build Reference Indices ===================================	https://github.com/datirium/workflows.git Path: workflows/cellranger-mkref.cwl Branch/Commit ID: c6bfa0de917efb536dd385624fc7702e6748e61d
	ani_top_n	https://github.com/ncbi/pgap.git Path: task_types/tt_ani_top_n.cwl Branch/Commit ID: 23f0ee7a36649ab37cabdd9277b7c82d098be79c
	Single-Cell RNA-Seq Cluster Analysis Single-Cell RNA-Seq Cluster Analysis Clusters cells by similarity of gene expression data from the outputs of the “Single-Cell RNA-Seq Dimensionality Reduction Analysis” pipeline. The results of this workflow are used in the “Single-Cell Manual Cell Type Assignment”, “Single-Cell RNA-Seq Differential Expression Analysis”, “Single-Cell RNA-Seq Trajectory Analysis”, and “Single-Cell Differential Abundance Analysis” pipelines.	https://github.com/datirium/workflows.git Path: workflows/sc-rna-cluster.cwl Branch/Commit ID: cc6fa135d04737fdde3b4414d6e214cf8c812f6e
	gathered exome alignment and somatic variant detection for cle purpose	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome_cle_gathered.cwl Branch/Commit ID: 788bdc99c1d5b6ee7c431c3c011eb30d385c1370