Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph sac-preprocess.cwl#align-texts-wf.cwl

https://github.com/KBNLresearch/ochre.git

Path: ochre/cwl/sac-preprocess.cwl

Branch/Commit ID: d187a94a601e806e001d31362ba0c9c2534eb426

Packed ID: align-texts-wf.cwl
workflow graph functional-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/checker_wf/functional-wf.cwl

Branch/Commit ID: 0db44e3c9805a070564f954222efff71cd791b70
workflow graph readgroups_bam_to_readgroups_fastq_lists.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/readgroups_bam_to_readgroups_fastq_lists.cwl

Branch/Commit ID: 8edf6a5e4e7790434ad0742e50d0c97a5d0bb846
workflow graph process VCF workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/strelka_process_vcf.cwl

Branch/Commit ID: 0805e8e0d358136468e0a9f49e06005e41965adc
workflow graph workflow.cwl

https://github.com/NAL-i5K/Organism_Onboarding.git

Path: flow_md5checksums/workflow.cwl

Branch/Commit ID: c4c5822441a6a7342e9fdede8e06c56ff865c74c
workflow graph screen out taxa

Remove sequences which align against a reference set using bowtie2. The references are preformatted (index files)

 https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/organism-screening.workflow.cwl

Branch/Commit ID: 6c5d0068bdb4f19a36a653c39964aefb9e5a7b1b
workflow graph Super-enhancer post ChIP-Seq analysis

Super-enhancers, consist of clusters of enhancers that are densely occupied by the master regulators and Mediator. Super-enhancers differ from typical enhancers in size, transcription factor density and content, ability to activate transcription, and sensitivity to perturbation. Use to create stitched enhancers, and to separate super-enhancers from typical enhancers using sequencing data (.bam) given a file of previously identified constituent enhancers (.gff)

https://github.com/datirium/workflows.git

Path: workflows/super-enhancer.cwl

Branch/Commit ID: d6f58c383d0676269afb519399061191a1144a6a
workflow graph Unaligned to aligned BAM

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/align.cwl

Branch/Commit ID: 479c9b3e3fa32ec9c7cd4073cfbccc675fd254d9
workflow graph bwa_se.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/bwa_se.cwl

Branch/Commit ID: 8edf6a5e4e7790434ad0742e50d0c97a5d0bb846
workflow graph exome alignment with qc

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/exome_alignment.cwl

Branch/Commit ID: a23f42ef49c10a588fd35a3afaad5de03e253533