Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph tRNA_selection.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: ca6ca61
workflow graph Data2Services CWL workflow to convert CSV/TSV files with statements split, Vincent Emonet <vincent.emonet@gmail.com>

https://github.com/MaastrichtU-IDS/bio2rdf.git

Path: support/pharmgkb/graphdb-workflow/workflow.cwl

Branch/Commit ID: master
workflow graph HS Metrics workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/hs_metrics.cwl

Branch/Commit ID: 3bebaf9b70331de9f4845e2223c55082f5a812fb
workflow graph snaptools_create_snap_file.cwl

https://github.com/denis-yuen/SnapTools.git

Path: snaptools_create_snap_file.cwl

Branch/Commit ID: feature/docker_cwl
workflow graph 02-trim-pe.cwl

RNA-seq 02 trimming - reads: PE

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/RNA-seq_pipeline/02-trim-pe.cwl

Branch/Commit ID: master
workflow graph collate_unique_SSU_headers.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: 930a2cf
workflow graph preprocessor_for_oxog.cwl

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter.git

Path: preprocessor_for_oxog.cwl

Branch/Commit ID: 1.0.0
workflow graph cnv_gridss

CNV GRIDSS calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/subworkflows/cnv_gridss.cwl

Branch/Commit ID: 3bb03c9b
workflow graph Single-Cell Manual Cell Type Assignment

Single-Cell Manual Cell Type Assignment Assigns identities to cells clustered with any of the “Single-Cell Cluster Analysis” pipelines. For “Single-Cell RNA-Seq Cluster Analysis” the results of this workflow are used in the “Single-Cell RNA-Seq Differential Expression Analysis”, “Single-Cell RNA-Seq Trajectory Analysis”, and — when combined with outputs from the “Cell Ranger Count (RNA+VDJ)” or “Cell Ranger Aggregate (RNA, RNA+VDJ)” workflow — in the “Single-Cell Immune Profiling Analysis” pipeline. For “Single-Cell ATAC-Seq Cluster Analysis”, the results of this workflow are used in the “Single-Cell ATAC-Seq Differential Accessibility Analysis” and “Single-Cell ATAC-Seq Genome Coverage” pipelines. For “Single-Cell WNN Cluster Analysis”, the results of this workflow are used in all of the above, except the “Single-Cell Immune Profiling Analysis” pipeline.

 https://github.com/datirium/workflows.git

Path: workflows/sc-ctype-assign.cwl

Branch/Commit ID: master
workflow graph Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)

https://github.com/ncbi/pgap.git

Path: bacterial_annot/wf_bacterial_annot_pass1.cwl

Branch/Commit ID: test