Explore Workflows
View already parsed workflows here or click here to add your own
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EMG assembly for paired end Illumina
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https://github.com/farahzkhan/ebi-metagenomics-cwl.git
Path: workflows/emg-assembly.cwl Branch/Commit ID: master |
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ValidateReadout
Validate readout (if applicable for high and low gain chain). |
https://github.com/gammasim/workflows.git
Path: workflows/ValidateReadout.cwl Branch/Commit ID: main |
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rRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/rRNA_selection.cwl Branch/Commit ID: 3b602cb |
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A workflow that aligns a fasta file and provides statistics on the SAM file
A workflow that aligns a fasta file and provides statistics on the SAM file |
https://github.com/dockstore/bcc2020-training.git
Path: cwl-training/exercise3/solution/align_and_metrics_imports.cwl Branch/Commit ID: master |
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qiime2 explore sample taxonomic composition
Taxonomic analysis from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-deblur.cwl Branch/Commit ID: qiime2-workflow Packed ID: qiime2-08-taxonomic-analysis.cwl |
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STAR-RNA-Seq alignment and transcript/gene abundance workflow with Xenosplit
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/rnaseq_star_fusion_with_xenosplit.cwl Branch/Commit ID: master |
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Indices builder from GBOL RDF (TTL)
Workflow to build different indices for different tools from a genome and transcriptome. This workflow expects an (annotated) genome in GBOL ttl format. Steps: - SAPP: rdf2gtf (genome fasta) - SAPP: rdf2fasta (transcripts fasta) - STAR index (Optional for Eukaryotic origin) - bowtie2 index - kallisto index |
https://git.wur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_indexbuilder.cwl Branch/Commit ID: master |
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step-valuefrom5-wf.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/step-valuefrom5-wf.cwl Branch/Commit ID: master |
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etl.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/dnaseq/etl.cwl Branch/Commit ID: 1.0 |
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EMG pipeline v3.0 (paired end version)
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3-paired.cwl Branch/Commit ID: ca6ca613 |
