Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph DEPRECATED - Motif Finding with HOMER with target and background regions from peaks

Motif Finding with HOMER with target and background regions from peaks --------------------------------------------------- HOMER contains a novel motif discovery algorithm that was designed for regulatory element analysis in genomics applications (DNA only, no protein). It is a differential motif discovery algorithm, which means that it takes two sets of sequences and tries to identify the regulatory elements that are specifically enriched in on set relative to the other. It uses ZOOPS scoring (zero or one occurrence per sequence) coupled with the hypergeometric enrichment calculations (or binomial) to determine motif enrichment. HOMER also tries its best to account for sequenced bias in the dataset. It was designed with ChIP-Seq and promoter analysis in mind, but can be applied to pretty much any nucleic acids motif finding problem. For more information please refer to: ------------------------------------- [Official documentation](http://homer.ucsd.edu/homer/motif/)

 https://github.com/datirium/workflows.git

Path: workflows/homer-motif-analysis-peak.cwl

Branch/Commit ID: 69643d8c15f5357a320aa7e2f6adb2e71302fd20
workflow graph QuantSeq 3' FWD, FWD-UMI or REV for single-read mRNA-Seq data

### QuantSeq 3' FWD, FWD-UMI or REV for single-read mRNA-Seq data

 https://github.com/datirium/workflows.git

Path: workflows/trim-quantseq-mrnaseq-se-strand-specific.cwl

Branch/Commit ID: 69643d8c15f5357a320aa7e2f6adb2e71302fd20
workflow graph default-wf5.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/default-wf5.cwl

Branch/Commit ID: 1b5633876aabd4cb57ef3f1fe91c853f3ee82e46
workflow graph ValidateCameraPlateScale

Validate camera plate scale

 https://github.com/gammasim/workflows.git

Path: workflows/ValidateCameraPlateScale.cwl

Branch/Commit ID: bf4d4a44a543bcc04f4508ce020751c71550acf5
workflow graph SetTelescopeFiducialSphere

Derive telescope fiducial sphere radius from telescope structure parameters.

 https://github.com/gammasim/workflows.git

Path: workflows/SetTelescopeFiducialSphere.cwl

Branch/Commit ID: bf4d4a44a543bcc04f4508ce020751c71550acf5
workflow graph ValidateAtmosphericModel

Validate model of atmosphere

 https://github.com/gammasim/workflows.git

Path: workflows/ValidateAtmosphericModel.cwl

Branch/Commit ID: bf4d4a44a543bcc04f4508ce020751c71550acf5
workflow graph count-lines13-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/count-lines13-wf.cwl

Branch/Commit ID: 7ec307b01442936fad9b1149f4500496557505ff
workflow graph mk_coverage_QC_from_bed.cwl

https://github.com/YinanWang16/tso500-ctdna-post-processing.git

Path: cwl/workflows/mk_coverage_QC_from_bed.cwl

Branch/Commit ID: 08f855a08ca02b15c8d3540b28bb17b4f85a371a
workflow graph AcceptParameterWorkflowMissing

this is a placeholder for a missing acceptance workflow.

 https://github.com/gammasim/workflows.git

Path: workflows/AcceptParameterWorkflowMissing.cwl

Branch/Commit ID: bf4d4a44a543bcc04f4508ce020751c71550acf5
workflow graph revsort.cwl

https://github.com/ResearchObject/runcrate.git

Path: cwl/revsortlcase/revsort.cwl

Branch/Commit ID: 376f6b2c6332a4742d4512d6e1fb785a2f8b7285