Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	format_rrnas_from_seq_entry	https://github.com/ncbi/pgap.git Path: task_types/tt_format_rrnas_from_seq_entry.cwl Branch/Commit ID: 7f9cfcbda5998b164bd1d8f1f6006aefda0f47f3
	bact_get_kmer_reference	https://github.com/ncbi/pgap.git Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: ac387721a55fd91df3dcdf16e199354618b136d1
	Single-Cell Preprocessing Pipeline Devel version of Single-Cell Preprocessing Pipeline ===================================================	https://github.com/datirium/workflows.git Path: workflows/single-cell-preprocess.cwl Branch/Commit ID: 7ae3b75bbe614e59cdeaba06047234a6c40c0fe9
	wgs alignment and tumor-only variant detection	https://github.com/tmooney/cancer-genomics-workflow.git Path: definitions/pipelines/tumor_only_wgs.cwl Branch/Commit ID: 0db1a5f1ceedd4416ac550787c27b99c87dbe985
	bulk_process.cwl	https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git Path: steps/bulk_process.cwl Branch/Commit ID: 5465f666aac446a6d66fed1819e48a79395f6b02
	Unaligned to aligned BAM	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/align.cwl Branch/Commit ID: 1437aed13d240fd624f78df2c7efb096c5079d73
	retrieve metadata from Zenodo community For a given Zenodo community, retrieve its repository records as Zenodo JSON and (eventually) schema.org JSON-LD and DataCite v4 XML.	https://github.com/stain/ro-index-paper.git Path: code/data-gathering/workflows/zenodo-records.cwl Branch/Commit ID: eba15168698e62150c10924bd7b2fa1ff1f0c85a
	trim-rnaseq-se.cwl Runs RNA-Seq BioWardrobe basic analysis with single-end data file.	https://github.com/Barski-lab/workflows.git Path: workflows/trim-rnaseq-se.cwl Branch/Commit ID: 9a03dbe8829ca649814d9c8bd11fe3a673750a95
	Subworkflow to allow calling cnvkit with cram instead of bam files	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cram_to_cnvkit.cwl Branch/Commit ID: c6bbd4cdd612b3b5cc6e9000df4800c21e192bf5
	revsort.cwl Reverse the lines in a document, then sort those lines.	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/revsort.cwl Branch/Commit ID: 63f539ba60e91f0cb3ce7cda2c5da5c65525c375