Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph fastq2fasta.cwl

https://github.com/hpobio-lab/viral-analysis.git

Path: cwl/fastq2fasta/fastq2fasta.cwl

Branch/Commit ID: master
workflow graph preprocessor_for_oxog.cwl

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter.git

Path: preprocessor_for_oxog.cwl

Branch/Commit ID: 1.0.0
workflow graph Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/pipelines/pvacseq.cwl

Branch/Commit ID: No_filters_detect_variants
workflow graph wf_full_IDR_pipeline_1input.cwl

The main workflow that: produces two reproducible peaks via IDR given two eCLIP samples (1 input total for both reps, 1 IP each replicate). runs the 'rescue ratio' statistic runs the 'consistency ratio' statistic

https://github.com/YeoLab/merge_peaks.git

Path: cwl/wf_full_IDR_pipeline_1input.cwl

Branch/Commit ID: master
workflow graph Run pindel on provided region

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/pindel_region.cwl

Branch/Commit ID: downsample_and_recall
workflow graph integrity.cwl

https://github.com/denis-yuen/gdc-dnaseq-cwl.git

Path: workflows/dnaseq/integrity.cwl

Branch/Commit ID: master
workflow graph exomeseq-03-organizedirectories.cwl

https://github.com/Duke-GCB/bespin-cwl.git

Path: subworkflows/exomeseq-03-organizedirectories.cwl

Branch/Commit ID: master
workflow graph chksum_seqval_wf_paired_fq.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/chksum_seqval_wf_paired_fq.cwl

Branch/Commit ID: 0.2.3
workflow graph wf-jointcall.cwl

https://github.com/bcbio/bcbio_validation_workflows.git

Path: giab-joint/giab-joint-workflow/wf-jointcall.cwl

Branch/Commit ID: master
workflow graph bulk_process.cwl

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: steps/bulk_process.cwl

Branch/Commit ID: develop