Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph super-enhancer.cwl

Both `islands_file` and `islands_control_file` should be produced by the same cwl tool (iaintersect.cwl or macs2-callpeak-biowardrobe-only.cwl)

https://github.com/Barski-lab/workflows.git

Path: workflows/super-enhancer.cwl

Branch/Commit ID: 7bda675d999a449a911df3a6973c60a39565bc24
workflow graph tt_hmmsearch_wnode.cwl

https://github.com/ncbi/pgap.git

Path: task_types/tt_hmmsearch_wnode.cwl

Branch/Commit ID: 8fb4ac7f5a66897206c7469101a471108b06eada
workflow graph Nested workflow example

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/nested.cwl

Branch/Commit ID: bbe20f54deea92d9c9cd38cb1f23c4423133d3de
workflow graph allele-process-strain.cwl

https://github.com/datirium/workflows.git

Path: subworkflows/allele-process-strain.cwl

Branch/Commit ID: 69623308d3b5577a4672b1d5aaf104ad1a259b20
workflow graph ST610106_seissol.cwl

https://github.com/Marco-Salvi/dtc61.git

Path: ST610106_seissol.cwl

Branch/Commit ID: 640110a3d6d19d36306c373f73508d4c140b50c7
workflow graph cluster_blastp_wnode and gpx_qdump combined

https://github.com/ncbi/pgap.git

Path: task_types/tt_cluster_and_qdump.cwl

Branch/Commit ID: 8fb4ac7f5a66897206c7469101a471108b06eada
workflow graph tt_kmer_compare_wnode

Pairwise comparison

 https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_compare_wnode.cwl

Branch/Commit ID: 72804b6506c9f54ec75627f82aafe6a28d7a49fa
workflow graph sc_atac_seq_initial_analysis.cwl

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: steps/sc_atac_seq_initial_analysis.cwl

Branch/Commit ID: 06aeffe8b2a13e62d412d6e1b03482f6b9247960
workflow graph sc_atac_seq_prep_process_init.cwl

https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git

Path: sc-atac-seq-pipeline/steps/sc_atac_seq_prep_process_init.cwl

Branch/Commit ID: 68e0cc1be35751f5ef5958050742ddfffd564d3c
workflow graph rnaseq-pe.cwl

Runs RNA-Seq BioWardrobe basic analysis with pair-end data file.

https://github.com/Barski-lab/workflows.git

Path: workflows/rnaseq-pe.cwl

Branch/Commit ID: 8587882f145d3eb8e258e7bf819a94f8dd666dbf