Explore Workflows
View already parsed workflows here or click here to add your own
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FastQC - a quality control tool for high throughput sequence data
FastQC - a quality control tool for high throughput sequence data ===================================== FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems of which you should be aware before doing any further analysis. The main functions of FastQC are: - Import of data from FastQ files (any variant) - Providing a quick overview to tell you in which areas there may be problems - Summary graphs and tables to quickly assess your data - Export of results to an HTML based permanent report - Offline operation to allow automated generation of reports without running the interactive application |
https://github.com/datirium/workflows.git
Path: workflows/fastqc.cwl Branch/Commit ID: 7030da528559c7106d156284e50ff0ecedab0c4e |
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Vcf concordance evaluation workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/vcf_eval_concordance.cwl Branch/Commit ID: b7d9ace34664d3cedb16f2512c8a6dc6debfc8ca |
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SetPhotonDelay
Derive additional delay of photon arrival times at the photodetectors. |
https://github.com/gammasim/workflows.git
Path: workflows/SetPhotonDelay.cwl Branch/Commit ID: bf4d4a44a543bcc04f4508ce020751c71550acf5 |
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mut2.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/mut2.cwl Branch/Commit ID: 639229b1159cf484e70e52da10194561b3fad719 |
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revsort.cwl
Reverse the lines in a document, then sort those lines. |
https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/revsort.cwl Branch/Commit ID: 1b5633876aabd4cb57ef3f1fe91c853f3ee82e46 |
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Subworkflow to allow calling cnvkit with cram instead of bam files
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cram_to_cnvkit.cwl Branch/Commit ID: ddb49a0951d9ad537269d7db3fe8f904495a8bf4 |
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extract_readgroups_bam.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/extract_readgroups_bam.cwl Branch/Commit ID: 3cb464a3a5c39cc060cd23d9c60918bc9ffb169b |
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group-isoforms-batch.cwl
Workflow runs group-isoforms.cwl tool using scatter for isoforms_file input. genes_filename and common_tss_filename inputs are ignored. |
https://github.com/datirium/workflows.git
Path: tools/group-isoforms-batch.cwl Branch/Commit ID: 5561f7ee11dd74848680351411a19aa87b13d27b |
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extract_readgroup_fastq_se.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/extract_readgroup_fastq_se.cwl Branch/Commit ID: 3cb464a3a5c39cc060cd23d9c60918bc9ffb169b |
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extract_amplicon_kit.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/extract_amplicon_kit.cwl Branch/Commit ID: 3cb464a3a5c39cc060cd23d9c60918bc9ffb169b |
