Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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protein_extract
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https://github.com/ncbi/pgap.git
Path: progs/protein_extract.cwl Branch/Commit ID: c17cac4c046f8ba2b8574a121c44a72d2e6b27e6 |
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Filter Protein Seeds I; Find ProSplign Alignments I
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https://github.com/ncbi-gpipe/pgap.git
Path: protein_alignment/wf_compart_filter_prosplign.cwl Branch/Commit ID: 23fd77707aa3c7bc214f1ba19f25c714ce2a3906 |
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Filter Protein Alignments I
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https://github.com/ncbi-gpipe/pgap.git
Path: protein_alignment/wf_align_filter.cwl Branch/Commit ID: 23fd77707aa3c7bc214f1ba19f25c714ce2a3906 |
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Seed Protein Alignments I
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https://github.com/ncbi-gpipe/pgap.git
Path: protein_alignment/wf_seed_1.cwl Branch/Commit ID: 23fd77707aa3c7bc214f1ba19f25c714ce2a3906 |
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protein_extract
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https://github.com/ncbi/pgap.git
Path: progs/protein_extract.cwl Branch/Commit ID: 01a5c0a8834846ce04fed190eec7d1cc39a3df48 |
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Tag enrichment heatmap and density profile around regions of interest
Generates tag density heatmap and histogram for the centered list of features in a headerless regions file. - If provided regions file is a gene list with the following columns `chrom start end name score strand` set `Gene TSS` as a re-centering criteria. - If provided regions file is a peak list with the following columns `chrom start end name` set `Peak Center` as a re-centering criteria. `score` column is always ignored. |
https://github.com/datirium/workflows.git
Path: workflows/heatmap.cwl Branch/Commit ID: 69643d8c15f5357a320aa7e2f6adb2e71302fd20 |
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tt_blastn_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_blastn_wnode.cwl Branch/Commit ID: 01a5c0a8834846ce04fed190eec7d1cc39a3df48 |
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Unaligned BAM to BQSR
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: da335d9963418f7bedd84cb2791a0df1b3165ffe |
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bact_get_kmer_reference
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https://github.com/ncbi/pgap.git
Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: 01a5c0a8834846ce04fed190eec7d1cc39a3df48 |
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tt_fscr_calls_pass1
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https://github.com/ncbi/pgap.git
Path: task_types/tt_fscr_calls_pass1.cwl Branch/Commit ID: 01a5c0a8834846ce04fed190eec7d1cc39a3df48 |
