Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph EMG pipeline v3.0 (paired end version)

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3-paired.cwl

Branch/Commit ID: a8abd0e
workflow graph revcomp.cwl

https://github.com/pvanheus/cwltutorial.git

Path: revcomp/revcomp.cwl

Branch/Commit ID: master
workflow graph amplicon-2.cwl

https://github.com/EBI-Metagenomics/pipeline-v5.git

Path: workflows/conditionals/amplicon/amplicon-2.cwl

Branch/Commit ID: master
workflow graph cnv_exomedepth

CNV ExomeDepth calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/cnv_exome_depth.cwl

Branch/Commit ID: 1.1.3
workflow graph 03-map-pe.cwl

ATAC-seq 03 mapping - reads: PE

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/03-map-pe.cwl

Branch/Commit ID: master
workflow graph CODEX analysis pipeline using Cytokit

https://github.com/hubmapconsortium/codex-pipeline.git

Path: steps/ometiff_second_stitching.cwl

Branch/Commit ID: no-gpu-for-cwl-vis-only
workflow graph bulk_analysis.cwl

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: steps/bulk_analysis.cwl

Branch/Commit ID: 102d8cb
workflow graph Unaligned BAM to BQSR and VCF

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl

Branch/Commit ID: No_filters_detect_variants
workflow graph no-inputs-wf.cwl

Workflow without inputs.

 https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/no-inputs-wf.cwl

Branch/Commit ID: main
workflow graph Water body detection based on NDWI and the otsu threshold

Water bodies detection based on NDWI and otsu threshold applied to Sentinel-2 or Landsat-9 staged acquisitions

 https://github.com/eoap/mastering-app-package.git

Path: cwl-workflow/app-water-body.cwl

Branch/Commit ID: main

Packed ID: water-bodies