Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Exome QC workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_exome.cwl Branch/Commit ID: 3b6d0475c80f5e452793a46a38ee188742b86595
	Varscan Workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: 8438316338e66823e1c9aca9f675b2bf33f2aa59
	echo-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/override/echo-wf.cwl Branch/Commit ID: 03af16c9df2ee77485d4ab092cd64ae096d2e71c
	protein_extract	https://github.com/ncbi/pgap.git Path: progs/protein_extract.cwl Branch/Commit ID: 5c40c5a0464c84076e0e407a0e05522b43bdc0a6
	unix_align_workflow.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: tools/unix/unix_align_workflow.cwl Branch/Commit ID: 18affdd927cc388fab2c113dc2ec6df782af2a52
	Unaligned to aligned BAM	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/align.cwl Branch/Commit ID: 6b365b79675b2aabfb8d5829bb8df0a6e986b037
	step-valuefrom3-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/step-valuefrom3-wf.cwl Branch/Commit ID: 0b3846fbf866584870a0b1ce902b5574f549dfee
	Prepare user input Prepare user input for NCBI-PGAP pipeline	https://github.com/ncbi/pgap.git Path: prepare_user_input2.cwl Branch/Commit ID: cabb1a9a95244e93294727be8cf5816c38992cb0
	adapter for sequence_align_and_tag Some workflow engines won't stage files in our nested structure, so parse it out here	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: f9600f9959acdc30259ba7e64de61104c9b01f0b
	Prepare user input Prepare user input for NCBI-PGAP pipeline	https://github.com/ncbi/pgap.git Path: prepare_user_input2.cwl Branch/Commit ID: 7b21dc40840852f3942c31b9c472346ea3f9a3ca