Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Unaligned bam to sorted, markduped bam	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/align_sort_markdup.cwl Branch/Commit ID: efbbe5ed51f6ac583e87a348785c72818a33f56e
	Super-enhancer post ChIP-Seq analysis Super-enhancers, consist of clusters of enhancers that are densely occupied by the master regulators and Mediator. Super-enhancers differ from typical enhancers in size, transcription factor density and content, ability to activate transcription, and sensitivity to perturbation. Use to create stitched enhancers, and to separate super-enhancers from typical enhancers using sequencing data (.bam) given a file of previously identified constituent enhancers (.gff)	https://github.com/datirium/workflows.git Path: workflows/super-enhancer.cwl Branch/Commit ID: f343b7c2d377876476087491025bb6bf5152a004
	running cellranger mkfastq and count	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl Branch/Commit ID: 8438316338e66823e1c9aca9f675b2bf33f2aa59
	running cellranger mkfastq and count	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl Branch/Commit ID: 28d1065759cbd389594ee33b41fd1103ced5436d
	running cellranger mkfastq and count	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl Branch/Commit ID: 3b6d0475c80f5e452793a46a38ee188742b86595
	workflow.cwl	https://github.com/NAL-i5K/Organism_Onboarding.git Path: flow_dispatch/2blat/workflow.cwl Branch/Commit ID: 8528075fe60d5c9f857abb4b0341b7ab673bd68d
	PGAP Pipeline, simple user input, PGAPX-134 PGAP pipeline for external usage, powered via containers, simple user input: (FASTA + yaml only, no template)	https://github.com/ncbi/pgap.git Path: pgap.cwl Branch/Commit ID: 5c40c5a0464c84076e0e407a0e05522b43bdc0a6
	Seed Search Compartments	https://github.com/ncbi/pgap.git Path: protein_alignment/wf_seed.cwl Branch/Commit ID: 5c40c5a0464c84076e0e407a0e05522b43bdc0a6
	Exome QC workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_exome.cwl Branch/Commit ID: 3b6d0475c80f5e452793a46a38ee188742b86595
	Varscan Workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: 8438316338e66823e1c9aca9f675b2bf33f2aa59