Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	env-wf1.cwl	https://github.com/common-workflow-language/common-workflow-language.git Path: v1.0/v1.0/env-wf1.cwl Branch/Commit ID: 9a23706ec061c5d2c02ff60238d218aadf0b5db9
	running cellranger mkfastq and count	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl Branch/Commit ID: 026bba9511561246ad65458f0f55c88cead26fbd
	02-trim-se.cwl ATAC-seq 02 trimming - reads: SE	https://github.com/alexbarrera/GGR-cwl.git Path: v1.0/ATAC-seq_pipeline/02-trim-se.cwl Branch/Commit ID: dd2241dbbbc23abd91b5e6a18c139530e7ef8d2b
	Create Genomic Collection for Bacterial Pipeline, ASN.1 input	https://github.com/ncbi/pgap.git Path: genomic_source/wf_genomic_source_asn.cwl Branch/Commit ID: cabb1a9a95244e93294727be8cf5816c38992cb0
	process VCF workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/strelka_process_vcf.cwl Branch/Commit ID: 40097e1ed094c5b42b68f3db2ff2cbe78c182479
	scatter GATK HaplotypeCaller over intervals	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: 6f9f8a2057c6a9f221a44559f671e87a75c70075
	protein_extract	https://github.com/ncbi/pgap.git Path: progs/protein_extract.cwl Branch/Commit ID: cabb1a9a95244e93294727be8cf5816c38992cb0
	umi duplex alignment workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/duplex_alignment.cwl Branch/Commit ID: 026bba9511561246ad65458f0f55c88cead26fbd
	Apply filters to VCF file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/filter_vcf.cwl Branch/Commit ID: dc2c019c1aa24cc01b451a0f048cf94a35f163c4
	Varscan Workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: a23f42ef49c10a588fd35a3afaad5de03e253533