Explore Workflows

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Graph	Name	Retrieved From	View
	Pairwise genomic regions intersection Pairwise genomic regions intersection ============================================= Overlaps peaks from two ChIP/ATAC experiments	https://github.com/datirium/workflows.git Path: workflows/peak-intersect.cwl Branch/Commit ID: ebbf23764ede324cabc064bd50647c1f643726fa
	allele-rnaseq-pe.cwl	https://github.com/Barski-lab/workflows.git Path: workflows/allele-rnaseq-pe.cwl Branch/Commit ID: ca2dbb71d0537b1d93a8bd44719250cf8949b157
	Whole genome alignment and somatic variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_wgs.cwl Branch/Commit ID: 22fce2dbdada0c4135b6f0677f78535cf980cb07
	schemadef-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/schemadef-wf.cwl Branch/Commit ID: 7dec97bb8f0bc2d9e9eb710faf41f2e98cc7cdda
	js_output_workflow.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/js_output_workflow.cwl Branch/Commit ID: 49cd284a8fc7884de763573075d3e1d6a4c1ffdd
	count-lines11-null-step-wf-noET.cwl	https://github.com/common-workflow-language/cwl-v1.1.git Path: tests/count-lines11-null-step-wf-noET.cwl Branch/Commit ID: 664835e83eb5e57eee18a04ce7b05fb9d70d77b7
	align_merge_sas	https://github.com/ncbi/pgap.git Path: task_types/tt_align_merge_sas.cwl Branch/Commit ID: c28cfb9882dedd3c522160f933cff1050ae24100
	Motif Finding with HOMER with custom background regions Motif Finding with HOMER with custom background regions --------------------------------------------------- HOMER contains a novel motif discovery algorithm that was designed for regulatory element analysis in genomics applications (DNA only, no protein). It is a differential motif discovery algorithm, which means that it takes two sets of sequences and tries to identify the regulatory elements that are specifically enriched in on set relative to the other. It uses ZOOPS scoring (zero or one occurrence per sequence) coupled with the hypergeometric enrichment calculations (or binomial) to determine motif enrichment. HOMER also tries its best to account for sequenced bias in the dataset. It was designed with ChIP-Seq and promoter analysis in mind, but can be applied to pretty much any nucleic acids motif finding problem. For more information please refer to: ------------------------------------- [Official documentation](http://homer.ucsd.edu/homer/motif/)	https://github.com/datirium/workflows.git Path: workflows/homer-motif-analysis-bg.cwl Branch/Commit ID: c6bfa0de917efb536dd385624fc7702e6748e61d
	Bisulfite alignment and QC	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/bisulfite.cwl Branch/Commit ID: 5cb188131f786ed33156e2f0e3dd63ab9c04245d
	taxonomy_check_16S	https://github.com/ncbi/pgap.git Path: task_types/tt_taxonomy_check_16S.cwl Branch/Commit ID: 252e7214ac64cb1128881e76743013e61bc7ec38